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Discriminative Analysis of Different Grades of Gaharu (Aquilaria malaccensis Lamk.) via (1)H-NMR-Based Metabolomics Using PLS-DA and Random Forests Classification Models
Gaharu (agarwood, Aquilaria malaccensis Lamk.) is a valuable tropical rainforest product traded internationally for its distinctive fragrance. It is not only popular as incense and in perfumery, but also favored in traditional medicine due to its sedative, carminative, cardioprotective and analgesic...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6151416/ https://www.ncbi.nlm.nih.gov/pubmed/28946701 http://dx.doi.org/10.3390/molecules22101612 |
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author | Ismail, Siti Nazirah Maulidiani, M. Akhtar, Muhammad Tayyab Abas, Faridah Ismail, Intan Safinar Khatib, Alfi Ali, Nor Azah Mohamad Shaari, Khozirah |
author_facet | Ismail, Siti Nazirah Maulidiani, M. Akhtar, Muhammad Tayyab Abas, Faridah Ismail, Intan Safinar Khatib, Alfi Ali, Nor Azah Mohamad Shaari, Khozirah |
author_sort | Ismail, Siti Nazirah |
collection | PubMed |
description | Gaharu (agarwood, Aquilaria malaccensis Lamk.) is a valuable tropical rainforest product traded internationally for its distinctive fragrance. It is not only popular as incense and in perfumery, but also favored in traditional medicine due to its sedative, carminative, cardioprotective and analgesic effects. The current study addresses the chemical differences and similarities between gaharu samples of different grades, obtained commercially, using (1)H-NMR-based metabolomics. Two classification models: partial least squares-discriminant analysis (PLS-DA) and Random Forests were developed to classify the gaharu samples on the basis of their chemical constituents. The gaharu samples could be reclassified into a ‘high grade’ group (samples A, B and D), characterized by high contents of kusunol, jinkohol, and 10-epi-γ-eudesmol; an ‘intermediate grade’ group (samples C, F and G), dominated by fatty acid and vanillic acid; and a ‘low grade’ group (sample E and H), which had higher contents of aquilarone derivatives and phenylethyl chromones. The results showed that (1)H- NMR-based metabolomics can be a potential method to grade the quality of gaharu samples on the basis of their chemical constituents. |
format | Online Article Text |
id | pubmed-6151416 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-61514162018-11-13 Discriminative Analysis of Different Grades of Gaharu (Aquilaria malaccensis Lamk.) via (1)H-NMR-Based Metabolomics Using PLS-DA and Random Forests Classification Models Ismail, Siti Nazirah Maulidiani, M. Akhtar, Muhammad Tayyab Abas, Faridah Ismail, Intan Safinar Khatib, Alfi Ali, Nor Azah Mohamad Shaari, Khozirah Molecules Article Gaharu (agarwood, Aquilaria malaccensis Lamk.) is a valuable tropical rainforest product traded internationally for its distinctive fragrance. It is not only popular as incense and in perfumery, but also favored in traditional medicine due to its sedative, carminative, cardioprotective and analgesic effects. The current study addresses the chemical differences and similarities between gaharu samples of different grades, obtained commercially, using (1)H-NMR-based metabolomics. Two classification models: partial least squares-discriminant analysis (PLS-DA) and Random Forests were developed to classify the gaharu samples on the basis of their chemical constituents. The gaharu samples could be reclassified into a ‘high grade’ group (samples A, B and D), characterized by high contents of kusunol, jinkohol, and 10-epi-γ-eudesmol; an ‘intermediate grade’ group (samples C, F and G), dominated by fatty acid and vanillic acid; and a ‘low grade’ group (sample E and H), which had higher contents of aquilarone derivatives and phenylethyl chromones. The results showed that (1)H- NMR-based metabolomics can be a potential method to grade the quality of gaharu samples on the basis of their chemical constituents. MDPI 2017-09-25 /pmc/articles/PMC6151416/ /pubmed/28946701 http://dx.doi.org/10.3390/molecules22101612 Text en © 2017 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ismail, Siti Nazirah Maulidiani, M. Akhtar, Muhammad Tayyab Abas, Faridah Ismail, Intan Safinar Khatib, Alfi Ali, Nor Azah Mohamad Shaari, Khozirah Discriminative Analysis of Different Grades of Gaharu (Aquilaria malaccensis Lamk.) via (1)H-NMR-Based Metabolomics Using PLS-DA and Random Forests Classification Models |
title | Discriminative Analysis of Different Grades of Gaharu (Aquilaria malaccensis Lamk.) via (1)H-NMR-Based Metabolomics Using PLS-DA and Random Forests Classification Models |
title_full | Discriminative Analysis of Different Grades of Gaharu (Aquilaria malaccensis Lamk.) via (1)H-NMR-Based Metabolomics Using PLS-DA and Random Forests Classification Models |
title_fullStr | Discriminative Analysis of Different Grades of Gaharu (Aquilaria malaccensis Lamk.) via (1)H-NMR-Based Metabolomics Using PLS-DA and Random Forests Classification Models |
title_full_unstemmed | Discriminative Analysis of Different Grades of Gaharu (Aquilaria malaccensis Lamk.) via (1)H-NMR-Based Metabolomics Using PLS-DA and Random Forests Classification Models |
title_short | Discriminative Analysis of Different Grades of Gaharu (Aquilaria malaccensis Lamk.) via (1)H-NMR-Based Metabolomics Using PLS-DA and Random Forests Classification Models |
title_sort | discriminative analysis of different grades of gaharu (aquilaria malaccensis lamk.) via (1)h-nmr-based metabolomics using pls-da and random forests classification models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6151416/ https://www.ncbi.nlm.nih.gov/pubmed/28946701 http://dx.doi.org/10.3390/molecules22101612 |
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