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Molecular Affinity of Mabolo Extracts to an Octopamine Receptor of a Fruit Fly
Essential oils extracted from plants are composed of volatile organic compounds that can affect insect behavior. Identifying the active components of the essential oils to their biochemical target is necessary to design novel biopesticides. In this study, essential oils extracted from Diospyros disc...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6151447/ https://www.ncbi.nlm.nih.gov/pubmed/29064449 http://dx.doi.org/10.3390/molecules22101677 |
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author | Dacanay, Francoise Neil D. Ladra, Ma. Carmina Joyce A. Junio, Hiyas A. Nellas, Ricky B. |
author_facet | Dacanay, Francoise Neil D. Ladra, Ma. Carmina Joyce A. Junio, Hiyas A. Nellas, Ricky B. |
author_sort | Dacanay, Francoise Neil D. |
collection | PubMed |
description | Essential oils extracted from plants are composed of volatile organic compounds that can affect insect behavior. Identifying the active components of the essential oils to their biochemical target is necessary to design novel biopesticides. In this study, essential oils extracted from Diospyros discolor (Willd.) were analyzed using gas chromatography mass spectroscopy (GC-MS) to create an untargeted metabolite profile. Subsequently, a conformational ensemble of the Drosophila melanogaster octopamine receptor in mushroom bodies (OAMB) was created from a molecular dynamics simulation to resemble a flexible receptor for docking studies. GC-MS analysis revealed the presence of several metabolites, i.e. mostly aromatic esters. Interestingly, these aromatic esters were found to exhibit relatively higher binding affinities to OAMB than the receptor’s natural agonist, octopamine. The molecular origin of this observed enhanced affinity is the [Formula: see text]-stacking interaction between the aromatic moieties of the residues and ligands. This strategy, computational inspection in tandem with untargeted metabolomics, may provide insights in screening the essential oils as potential OAMB inhibitors. |
format | Online Article Text |
id | pubmed-6151447 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-61514472018-11-13 Molecular Affinity of Mabolo Extracts to an Octopamine Receptor of a Fruit Fly Dacanay, Francoise Neil D. Ladra, Ma. Carmina Joyce A. Junio, Hiyas A. Nellas, Ricky B. Molecules Article Essential oils extracted from plants are composed of volatile organic compounds that can affect insect behavior. Identifying the active components of the essential oils to their biochemical target is necessary to design novel biopesticides. In this study, essential oils extracted from Diospyros discolor (Willd.) were analyzed using gas chromatography mass spectroscopy (GC-MS) to create an untargeted metabolite profile. Subsequently, a conformational ensemble of the Drosophila melanogaster octopamine receptor in mushroom bodies (OAMB) was created from a molecular dynamics simulation to resemble a flexible receptor for docking studies. GC-MS analysis revealed the presence of several metabolites, i.e. mostly aromatic esters. Interestingly, these aromatic esters were found to exhibit relatively higher binding affinities to OAMB than the receptor’s natural agonist, octopamine. The molecular origin of this observed enhanced affinity is the [Formula: see text]-stacking interaction between the aromatic moieties of the residues and ligands. This strategy, computational inspection in tandem with untargeted metabolomics, may provide insights in screening the essential oils as potential OAMB inhibitors. MDPI 2017-10-24 /pmc/articles/PMC6151447/ /pubmed/29064449 http://dx.doi.org/10.3390/molecules22101677 Text en © 2017 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Dacanay, Francoise Neil D. Ladra, Ma. Carmina Joyce A. Junio, Hiyas A. Nellas, Ricky B. Molecular Affinity of Mabolo Extracts to an Octopamine Receptor of a Fruit Fly |
title | Molecular Affinity of Mabolo Extracts to an Octopamine Receptor of a Fruit Fly |
title_full | Molecular Affinity of Mabolo Extracts to an Octopamine Receptor of a Fruit Fly |
title_fullStr | Molecular Affinity of Mabolo Extracts to an Octopamine Receptor of a Fruit Fly |
title_full_unstemmed | Molecular Affinity of Mabolo Extracts to an Octopamine Receptor of a Fruit Fly |
title_short | Molecular Affinity of Mabolo Extracts to an Octopamine Receptor of a Fruit Fly |
title_sort | molecular affinity of mabolo extracts to an octopamine receptor of a fruit fly |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6151447/ https://www.ncbi.nlm.nih.gov/pubmed/29064449 http://dx.doi.org/10.3390/molecules22101677 |
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