Cargando…

DNA Motif Recognition Modeling from Protein Sequences

Although the existing works on DNA motif discovery on DNA sequences are plethoric, mechanistic knowledge to infer DNA motifs from protein sequences across multiple DNA-binding domain families without conducting any wet-lab experiments is still lacking. Therefore, the k-spectrum recognition modeling...

Descripción completa

Detalles Bibliográficos
Autor principal:	Wong, Ka-Chun
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2018
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153143/ https://www.ncbi.nlm.nih.gov/pubmed/30267681 http://dx.doi.org/10.1016/j.isci.2018.09.003

Ejemplares similares

Heterodimeric DNA motif synthesis and validations
por: Wong, Ka-Chun, et al.
Publicado: (2019)

rMotifGen: random motif generator for DNA and protein sequences
por: Rouchka, Eric C, et al.
Publicado: (2007)

DNA motif elucidation using belief propagation
por: Wong, Ka-Chun, et al.
Publicado: (2013)

Sequence-Specific Recognition of DNA by Proteins: Binding Motifs Discovered Using a Novel Statistical/Computational Analysis
por: Jakubec, David, et al.
Publicado: (2016)

MEME: discovering and analyzing DNA and protein sequence motifs
por: Bailey, Timothy L., et al.
Publicado: (2006)

Structural basis for specific DNA sequence motif recognition by the TFAP2 transcription factors
por: Liu, Ke, et al.
Publicado: (2023)

DECODING COMPLEXITY IN BIOMOLECULAR RECOGNITION OF DNA I-MOTIFS
por: Yazdani, Kamyar, et al.
Publicado: (2023)

An RNA Recognition Motif-Containing Protein Functions in Meiotic Silencing by Unpaired DNA
por: Samarajeewa, Dilini A., et al.
Publicado: (2017)

RRMdb—an evolutionary-oriented database of RNA recognition motif sequences
por: Nowacka, Martyna, et al.
Publicado: (2019)

Switch recombination breakpoints are strictly correlated with DNA recognition motifs for immunoglobulin S gamma 3 DNA-binding proteins
Publicado: (1992)

Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
por: Redhead, Emma, et al.
Publicado: (2007)

Detecting seeded motifs in DNA sequences
por: Pizzi, Cinzia, et al.
Publicado: (2005)

Discovering Motifs in Ranked Lists of DNA Sequences
por: Eden, Eran, et al.
Publicado: (2007)

DNA recognition for virus assembly through multiple sequence-independent interactions with a helix-turn-helix motif
por: Greive, Sandra J., et al.
Publicado: (2016)

Recognition of the F&H motif by the Lowe Syndrome protein OCRL
por: Pirruccello, Michelle, et al.
Publicado: (2011)

The DNA Recognition Motif of GapR Has an Intrinsic DNA Binding Preference towards AT-rich DNA
por: Huang, Qian, et al.
Publicado: (2021)

Systematic identification of recognition motifs for the hub protein LC8
por: Jespersen, Nathan, et al.
Publicado: (2019)

An improved compound Poisson model for the number of motif hits in DNA sequences
por: Kopp, Wolfgang, et al.
Publicado: (2017)

Atomic Motif Recognition in (Bio)Polymers: Benchmarks From the Protein Data Bank
por: Helfrecht, Benjamin A., et al.
Publicado: (2019)

SVM2Motif—Reconstructing Overlapping DNA Sequence Motifs by Mimicking an SVM Predictor
por: Vidovic, Marina M. -C., et al.
Publicado: (2015)

Sequence-Specific Intramembrane Proteolysis: Identification of a Recognition Motif in Rhomboid Substrates
por: Strisovsky, Kvido, et al.
Publicado: (2009)

Learning protein constitutive motifs from sequence data
por: Tubiana, Jérôme, et al.
Publicado: (2019)

New scoring schema for finding motifs in DNA Sequences
por: Zare-Mirakabad, Fatemeh, et al.
Publicado: (2009)

A motif-independent metric for DNA sequence specificity
por: Pinello, Luca, et al.
Publicado: (2011)

A minimal motif for sequence recognition by mitochondrial transcription factor A (TFAM)
por: Choi, Woo Suk, et al.
Publicado: (2021)

RNA structural motif recognition based on least-squares distance
por: Shen, Ying, et al.
Publicado: (2013)

MOCCA: a flexible suite for modelling DNA sequence motif occurrence combinatorics
por: Bredesen, Bjørn André, et al.
Publicado: (2021)

The RNA-Recognition Motifs of TAR DNA-Binding Protein 43 May Play a Role in the Aberrant Self-Assembly of the Protein
por: Zacco, Elsa, et al.
Publicado: (2018)

Fragment-based modelling of single stranded RNA bound to RNA recognition motif containing proteins
por: de Beauchene, Isaure Chauvot, et al.
Publicado: (2016)

Practical Strategies for Discovering Regulatory DNA Sequence Motifs
por: MacIsaac, Kenzie D, et al.
Publicado: (2006)

Sequence search and analysis of gene products containing RNA recognition motifs in the human genome
por: Malhotra, Sony, et al.
Publicado: (2014)

PairMotif+: A Fast and Effective Algorithm for De Novo Motif Discovery in DNA sequences
por: Yu, Qiang, et al.
Publicado: (2013)

DNA and RNA Binding Proteins: From Motifs to Roles in Cancer
por: Bonczek, Ondrej, et al.
Publicado: (2022)

Highly prevalent putative quadruplex sequence motifs in human DNA
por: Todd, Alan K., et al.
Publicado: (2005)

A novel DNA sequence motif in human and mouse genomes
por: Zhang, Shilu, et al.
Publicado: (2015)

WildSpan: mining structured motifs from protein sequences
por: Hsu, Chen-Ming, et al.
Publicado: (2011)

EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences
por: Hu, Jianjun, et al.
Publicado: (2006)

A Discriminative Approach for Unsupervised Clustering of DNA Sequence Motifs
por: Stegmaier, Philip, et al.
Publicado: (2013)

Rules for the recognition of dilysine retrieval motifs by coatomer
por: Ma, Wenfu, et al.
Publicado: (2013)

Recognition of 27-Class Protein Folds by Adding the Interaction of Segments and Motif Information
por: Feng, Zhenxing, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_i6lhcovd0mefdnjg4rip7gd76m