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Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers
The accessibility of genomic DNA, as a key determinant of gene-related processes, is dependent on the packing density and structural dynamics of chromatin fiber. However, due to the highly dynamic and heterogeneous properties of chromatin fiber, it is technically challenging to study these propertie...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153500/ https://www.ncbi.nlm.nih.gov/pubmed/30310859 http://dx.doi.org/10.1007/s41048-018-0064-0 |
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author | Xiao, Xue Dong, Liping Wang, Yi-Zhou Wang, Peng-Ye Li, Ming Li, Guohong Chen, Ping Li, Wei |
author_facet | Xiao, Xue Dong, Liping Wang, Yi-Zhou Wang, Peng-Ye Li, Ming Li, Guohong Chen, Ping Li, Wei |
author_sort | Xiao, Xue |
collection | PubMed |
description | The accessibility of genomic DNA, as a key determinant of gene-related processes, is dependent on the packing density and structural dynamics of chromatin fiber. However, due to the highly dynamic and heterogeneous properties of chromatin fiber, it is technically challenging to study these properties of chromatin. Here, we report a strategy for dissecting the dynamics of chromatin fibers based on single-molecule magnetic tweezers. Using magnetic tweezers, we can manipulate the chromatin fiber and trace its extension during the folding and unfolding process under tension to investigate the dynamic structural transitions at single-molecule level. The highly accurate and reliable in vitro single-molecule strategy provides a new research platform to dissect the structural dynamics of chromatin fiber and its regulation by different epigenetic factors during gene expression. |
format | Online Article Text |
id | pubmed-6153500 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-61535002018-10-09 Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers Xiao, Xue Dong, Liping Wang, Yi-Zhou Wang, Peng-Ye Li, Ming Li, Guohong Chen, Ping Li, Wei Biophys Rep Method The accessibility of genomic DNA, as a key determinant of gene-related processes, is dependent on the packing density and structural dynamics of chromatin fiber. However, due to the highly dynamic and heterogeneous properties of chromatin fiber, it is technically challenging to study these properties of chromatin. Here, we report a strategy for dissecting the dynamics of chromatin fibers based on single-molecule magnetic tweezers. Using magnetic tweezers, we can manipulate the chromatin fiber and trace its extension during the folding and unfolding process under tension to investigate the dynamic structural transitions at single-molecule level. The highly accurate and reliable in vitro single-molecule strategy provides a new research platform to dissect the structural dynamics of chromatin fiber and its regulation by different epigenetic factors during gene expression. Springer Berlin Heidelberg 2018-08-29 2018 /pmc/articles/PMC6153500/ /pubmed/30310859 http://dx.doi.org/10.1007/s41048-018-0064-0 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Method Xiao, Xue Dong, Liping Wang, Yi-Zhou Wang, Peng-Ye Li, Ming Li, Guohong Chen, Ping Li, Wei Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers |
title | Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers |
title_full | Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers |
title_fullStr | Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers |
title_full_unstemmed | Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers |
title_short | Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers |
title_sort | dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers |
topic | Method |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153500/ https://www.ncbi.nlm.nih.gov/pubmed/30310859 http://dx.doi.org/10.1007/s41048-018-0064-0 |
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