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Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers

The accessibility of genomic DNA, as a key determinant of gene-related processes, is dependent on the packing density and structural dynamics of chromatin fiber. However, due to the highly dynamic and heterogeneous properties of chromatin fiber, it is technically challenging to study these propertie...

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Detalles Bibliográficos
Autores principales: Xiao, Xue, Dong, Liping, Wang, Yi-Zhou, Wang, Peng-Ye, Li, Ming, Li, Guohong, Chen, Ping, Li, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153500/
https://www.ncbi.nlm.nih.gov/pubmed/30310859
http://dx.doi.org/10.1007/s41048-018-0064-0
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author Xiao, Xue
Dong, Liping
Wang, Yi-Zhou
Wang, Peng-Ye
Li, Ming
Li, Guohong
Chen, Ping
Li, Wei
author_facet Xiao, Xue
Dong, Liping
Wang, Yi-Zhou
Wang, Peng-Ye
Li, Ming
Li, Guohong
Chen, Ping
Li, Wei
author_sort Xiao, Xue
collection PubMed
description The accessibility of genomic DNA, as a key determinant of gene-related processes, is dependent on the packing density and structural dynamics of chromatin fiber. However, due to the highly dynamic and heterogeneous properties of chromatin fiber, it is technically challenging to study these properties of chromatin. Here, we report a strategy for dissecting the dynamics of chromatin fibers based on single-molecule magnetic tweezers. Using magnetic tweezers, we can manipulate the chromatin fiber and trace its extension during the folding and unfolding process under tension to investigate the dynamic structural transitions at single-molecule level. The highly accurate and reliable in vitro single-molecule strategy provides a new research platform to dissect the structural dynamics of chromatin fiber and its regulation by different epigenetic factors during gene expression.
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spelling pubmed-61535002018-10-09 Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers Xiao, Xue Dong, Liping Wang, Yi-Zhou Wang, Peng-Ye Li, Ming Li, Guohong Chen, Ping Li, Wei Biophys Rep Method The accessibility of genomic DNA, as a key determinant of gene-related processes, is dependent on the packing density and structural dynamics of chromatin fiber. However, due to the highly dynamic and heterogeneous properties of chromatin fiber, it is technically challenging to study these properties of chromatin. Here, we report a strategy for dissecting the dynamics of chromatin fibers based on single-molecule magnetic tweezers. Using magnetic tweezers, we can manipulate the chromatin fiber and trace its extension during the folding and unfolding process under tension to investigate the dynamic structural transitions at single-molecule level. The highly accurate and reliable in vitro single-molecule strategy provides a new research platform to dissect the structural dynamics of chromatin fiber and its regulation by different epigenetic factors during gene expression. Springer Berlin Heidelberg 2018-08-29 2018 /pmc/articles/PMC6153500/ /pubmed/30310859 http://dx.doi.org/10.1007/s41048-018-0064-0 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Method
Xiao, Xue
Dong, Liping
Wang, Yi-Zhou
Wang, Peng-Ye
Li, Ming
Li, Guohong
Chen, Ping
Li, Wei
Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers
title Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers
title_full Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers
title_fullStr Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers
title_full_unstemmed Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers
title_short Dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers
title_sort dissection of structural dynamics of chromatin fibers by single-molecule magnetic tweezers
topic Method
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153500/
https://www.ncbi.nlm.nih.gov/pubmed/30310859
http://dx.doi.org/10.1007/s41048-018-0064-0
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