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Limits of noise for autoregulated gene expression

Gene expression is influenced by extrinsic noise (involving a fluctuating environment of cellular processes) and intrinsic noise (referring to fluctuations within a cell under constant environment). We study the standard model of gene expression including an (in-)active gene, mRNA and protein. Gene...

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Autores principales: Czuppon, Peter, Pfaffelhuber, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153675/
https://www.ncbi.nlm.nih.gov/pubmed/29797051
http://dx.doi.org/10.1007/s00285-018-1248-4
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author Czuppon, Peter
Pfaffelhuber, Peter
author_facet Czuppon, Peter
Pfaffelhuber, Peter
author_sort Czuppon, Peter
collection PubMed
description Gene expression is influenced by extrinsic noise (involving a fluctuating environment of cellular processes) and intrinsic noise (referring to fluctuations within a cell under constant environment). We study the standard model of gene expression including an (in-)active gene, mRNA and protein. Gene expression is regulated in the sense that the protein feeds back and either represses (negative feedback) or enhances (positive feedback) its production at the stage of transcription. While it is well-known that negative (positive) feedback reduces (increases) intrinsic noise, we give a precise result on the resulting fluctuations in protein numbers. The technique we use is an extension of the Langevin approximation and is an application of a central limit theorem under stochastic averaging for Markov jump processes (Kang et al. in Ann Appl Probab 24:721–759, 2014). We find that (under our scaling and in equilibrium), negative feedback leads to a reduction in the Fano factor of at most 2, while the noise under positive feedback is potentially unbounded. The fit with simulations is very good and improves on known approximations.
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spelling pubmed-61536752018-10-04 Limits of noise for autoregulated gene expression Czuppon, Peter Pfaffelhuber, Peter J Math Biol Article Gene expression is influenced by extrinsic noise (involving a fluctuating environment of cellular processes) and intrinsic noise (referring to fluctuations within a cell under constant environment). We study the standard model of gene expression including an (in-)active gene, mRNA and protein. Gene expression is regulated in the sense that the protein feeds back and either represses (negative feedback) or enhances (positive feedback) its production at the stage of transcription. While it is well-known that negative (positive) feedback reduces (increases) intrinsic noise, we give a precise result on the resulting fluctuations in protein numbers. The technique we use is an extension of the Langevin approximation and is an application of a central limit theorem under stochastic averaging for Markov jump processes (Kang et al. in Ann Appl Probab 24:721–759, 2014). We find that (under our scaling and in equilibrium), negative feedback leads to a reduction in the Fano factor of at most 2, while the noise under positive feedback is potentially unbounded. The fit with simulations is very good and improves on known approximations. Springer Berlin Heidelberg 2018-05-24 2018 /pmc/articles/PMC6153675/ /pubmed/29797051 http://dx.doi.org/10.1007/s00285-018-1248-4 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Article
Czuppon, Peter
Pfaffelhuber, Peter
Limits of noise for autoregulated gene expression
title Limits of noise for autoregulated gene expression
title_full Limits of noise for autoregulated gene expression
title_fullStr Limits of noise for autoregulated gene expression
title_full_unstemmed Limits of noise for autoregulated gene expression
title_short Limits of noise for autoregulated gene expression
title_sort limits of noise for autoregulated gene expression
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153675/
https://www.ncbi.nlm.nih.gov/pubmed/29797051
http://dx.doi.org/10.1007/s00285-018-1248-4
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