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Edge-Based Compartmental Modelling of an SIR Epidemic on a Dual-Layer Static–Dynamic Multiplex Network with Tunable Clustering
The duration, type and structure of connections between individuals in real-world populations play a crucial role in how diseases invade and spread. Here, we incorporate the aforementioned heterogeneities into a model by considering a dual-layer static–dynamic multiplex network. The static network l...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153944/ https://www.ncbi.nlm.nih.gov/pubmed/30136212 http://dx.doi.org/10.1007/s11538-018-0484-5 |
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author | Barnard, Rosanna C. Kiss, Istvan Z. Berthouze, Luc Miller, Joel C. |
author_facet | Barnard, Rosanna C. Kiss, Istvan Z. Berthouze, Luc Miller, Joel C. |
author_sort | Barnard, Rosanna C. |
collection | PubMed |
description | The duration, type and structure of connections between individuals in real-world populations play a crucial role in how diseases invade and spread. Here, we incorporate the aforementioned heterogeneities into a model by considering a dual-layer static–dynamic multiplex network. The static network layer affords tunable clustering and describes an individual’s permanent community structure. The dynamic network layer describes the transient connections an individual makes with members of the wider population by imposing constant edge rewiring. We follow the edge-based compartmental modelling approach to derive equations describing the evolution of a susceptible–infected–recovered epidemic spreading through this multiplex network of individuals. We derive the basic reproduction number, measuring the expected number of new infectious cases caused by a single infectious individual in an otherwise susceptible population. We validate model equations by showing convergence to pre-existing edge-based compartmental model equations in limiting cases and by comparison with stochastically simulated epidemics. We explore the effects of altering model parameters and multiplex network attributes on resultant epidemic dynamics. We validate the basic reproduction number by plotting its value against associated final epidemic sizes measured from simulation and predicted by model equations for a number of set-ups. Further, we explore the effect of varying individual model parameters on the basic reproduction number. We conclude with a discussion of the significance and interpretation of the model and its relation to existing research literature. We highlight intrinsic limitations and potential extensions of the present model and outline future research considerations, both experimental and theoretical. |
format | Online Article Text |
id | pubmed-6153944 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-61539442018-10-04 Edge-Based Compartmental Modelling of an SIR Epidemic on a Dual-Layer Static–Dynamic Multiplex Network with Tunable Clustering Barnard, Rosanna C. Kiss, Istvan Z. Berthouze, Luc Miller, Joel C. Bull Math Biol Original Article The duration, type and structure of connections between individuals in real-world populations play a crucial role in how diseases invade and spread. Here, we incorporate the aforementioned heterogeneities into a model by considering a dual-layer static–dynamic multiplex network. The static network layer affords tunable clustering and describes an individual’s permanent community structure. The dynamic network layer describes the transient connections an individual makes with members of the wider population by imposing constant edge rewiring. We follow the edge-based compartmental modelling approach to derive equations describing the evolution of a susceptible–infected–recovered epidemic spreading through this multiplex network of individuals. We derive the basic reproduction number, measuring the expected number of new infectious cases caused by a single infectious individual in an otherwise susceptible population. We validate model equations by showing convergence to pre-existing edge-based compartmental model equations in limiting cases and by comparison with stochastically simulated epidemics. We explore the effects of altering model parameters and multiplex network attributes on resultant epidemic dynamics. We validate the basic reproduction number by plotting its value against associated final epidemic sizes measured from simulation and predicted by model equations for a number of set-ups. Further, we explore the effect of varying individual model parameters on the basic reproduction number. We conclude with a discussion of the significance and interpretation of the model and its relation to existing research literature. We highlight intrinsic limitations and potential extensions of the present model and outline future research considerations, both experimental and theoretical. Springer US 2018-08-22 2018 /pmc/articles/PMC6153944/ /pubmed/30136212 http://dx.doi.org/10.1007/s11538-018-0484-5 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Article Barnard, Rosanna C. Kiss, Istvan Z. Berthouze, Luc Miller, Joel C. Edge-Based Compartmental Modelling of an SIR Epidemic on a Dual-Layer Static–Dynamic Multiplex Network with Tunable Clustering |
title | Edge-Based Compartmental Modelling of an SIR Epidemic on a Dual-Layer Static–Dynamic Multiplex Network with Tunable Clustering |
title_full | Edge-Based Compartmental Modelling of an SIR Epidemic on a Dual-Layer Static–Dynamic Multiplex Network with Tunable Clustering |
title_fullStr | Edge-Based Compartmental Modelling of an SIR Epidemic on a Dual-Layer Static–Dynamic Multiplex Network with Tunable Clustering |
title_full_unstemmed | Edge-Based Compartmental Modelling of an SIR Epidemic on a Dual-Layer Static–Dynamic Multiplex Network with Tunable Clustering |
title_short | Edge-Based Compartmental Modelling of an SIR Epidemic on a Dual-Layer Static–Dynamic Multiplex Network with Tunable Clustering |
title_sort | edge-based compartmental modelling of an sir epidemic on a dual-layer static–dynamic multiplex network with tunable clustering |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6153944/ https://www.ncbi.nlm.nih.gov/pubmed/30136212 http://dx.doi.org/10.1007/s11538-018-0484-5 |
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