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De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments

Tea plant (Camellia sinensis) is a typical fluoride (F) hyperaccumulator enriching most F in old leaves. There is association between the risk of fluorosis and excessive consumption of teas prepared using the old leaves. It is meaningful to develop methods for controlling F levels in tea leaves. We...

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Autores principales: Li, Qing-Sheng, Li, Xu-Min, Qiao, Ru-Ying, Shen, En-Hui, Lin, Xiao-Ming, Lu, Jian-Liang, Ye, Jian-Hui, Liang, Yue-Rong, Zheng, Xin-Qiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6154286/
https://www.ncbi.nlm.nih.gov/pubmed/30251991
http://dx.doi.org/10.1038/sdata.2018.194
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author Li, Qing-Sheng
Li, Xu-Min
Qiao, Ru-Ying
Shen, En-Hui
Lin, Xiao-Ming
Lu, Jian-Liang
Ye, Jian-Hui
Liang, Yue-Rong
Zheng, Xin-Qiang
author_facet Li, Qing-Sheng
Li, Xu-Min
Qiao, Ru-Ying
Shen, En-Hui
Lin, Xiao-Ming
Lu, Jian-Liang
Ye, Jian-Hui
Liang, Yue-Rong
Zheng, Xin-Qiang
author_sort Li, Qing-Sheng
collection PubMed
description Tea plant (Camellia sinensis) is a typical fluoride (F) hyperaccumulator enriching most F in old leaves. There is association between the risk of fluorosis and excessive consumption of teas prepared using the old leaves. It is meaningful to develop methods for controlling F levels in tea leaves. We generated a comprehensive RNA-seq dataset from tea plants grown at various F levels for different durations by hydroponics, aiming at providing information on mechanism of F metabolism in tea plant. Besides raw reads of the RNA-seq dataset, we present assembled unigenes and aligned unigenes with annotations versus the Gene Ontology (GO) databases, Kyoto Encyclopaedia of Genes and Genomes (KEGG) databases, and Nonredundant (Nr) protein databases with low e-values. 69,488 unigenes were obtained in total, in which 40,894 were given Nr annotations.
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spelling pubmed-61542862018-09-28 De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments Li, Qing-Sheng Li, Xu-Min Qiao, Ru-Ying Shen, En-Hui Lin, Xiao-Ming Lu, Jian-Liang Ye, Jian-Hui Liang, Yue-Rong Zheng, Xin-Qiang Sci Data Data Descriptor Tea plant (Camellia sinensis) is a typical fluoride (F) hyperaccumulator enriching most F in old leaves. There is association between the risk of fluorosis and excessive consumption of teas prepared using the old leaves. It is meaningful to develop methods for controlling F levels in tea leaves. We generated a comprehensive RNA-seq dataset from tea plants grown at various F levels for different durations by hydroponics, aiming at providing information on mechanism of F metabolism in tea plant. Besides raw reads of the RNA-seq dataset, we present assembled unigenes and aligned unigenes with annotations versus the Gene Ontology (GO) databases, Kyoto Encyclopaedia of Genes and Genomes (KEGG) databases, and Nonredundant (Nr) protein databases with low e-values. 69,488 unigenes were obtained in total, in which 40,894 were given Nr annotations. Nature Publishing Group 2018-09-25 /pmc/articles/PMC6154286/ /pubmed/30251991 http://dx.doi.org/10.1038/sdata.2018.194 Text en Copyright © 2018, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article.
spellingShingle Data Descriptor
Li, Qing-Sheng
Li, Xu-Min
Qiao, Ru-Ying
Shen, En-Hui
Lin, Xiao-Ming
Lu, Jian-Liang
Ye, Jian-Hui
Liang, Yue-Rong
Zheng, Xin-Qiang
De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments
title De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments
title_full De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments
title_fullStr De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments
title_full_unstemmed De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments
title_short De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments
title_sort de novo transcriptome assembly of fluorine accumulator tea plant camellia sinensis with fluoride treatments
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6154286/
https://www.ncbi.nlm.nih.gov/pubmed/30251991
http://dx.doi.org/10.1038/sdata.2018.194
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