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De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments
Tea plant (Camellia sinensis) is a typical fluoride (F) hyperaccumulator enriching most F in old leaves. There is association between the risk of fluorosis and excessive consumption of teas prepared using the old leaves. It is meaningful to develop methods for controlling F levels in tea leaves. We...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6154286/ https://www.ncbi.nlm.nih.gov/pubmed/30251991 http://dx.doi.org/10.1038/sdata.2018.194 |
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author | Li, Qing-Sheng Li, Xu-Min Qiao, Ru-Ying Shen, En-Hui Lin, Xiao-Ming Lu, Jian-Liang Ye, Jian-Hui Liang, Yue-Rong Zheng, Xin-Qiang |
author_facet | Li, Qing-Sheng Li, Xu-Min Qiao, Ru-Ying Shen, En-Hui Lin, Xiao-Ming Lu, Jian-Liang Ye, Jian-Hui Liang, Yue-Rong Zheng, Xin-Qiang |
author_sort | Li, Qing-Sheng |
collection | PubMed |
description | Tea plant (Camellia sinensis) is a typical fluoride (F) hyperaccumulator enriching most F in old leaves. There is association between the risk of fluorosis and excessive consumption of teas prepared using the old leaves. It is meaningful to develop methods for controlling F levels in tea leaves. We generated a comprehensive RNA-seq dataset from tea plants grown at various F levels for different durations by hydroponics, aiming at providing information on mechanism of F metabolism in tea plant. Besides raw reads of the RNA-seq dataset, we present assembled unigenes and aligned unigenes with annotations versus the Gene Ontology (GO) databases, Kyoto Encyclopaedia of Genes and Genomes (KEGG) databases, and Nonredundant (Nr) protein databases with low e-values. 69,488 unigenes were obtained in total, in which 40,894 were given Nr annotations. |
format | Online Article Text |
id | pubmed-6154286 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-61542862018-09-28 De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments Li, Qing-Sheng Li, Xu-Min Qiao, Ru-Ying Shen, En-Hui Lin, Xiao-Ming Lu, Jian-Liang Ye, Jian-Hui Liang, Yue-Rong Zheng, Xin-Qiang Sci Data Data Descriptor Tea plant (Camellia sinensis) is a typical fluoride (F) hyperaccumulator enriching most F in old leaves. There is association between the risk of fluorosis and excessive consumption of teas prepared using the old leaves. It is meaningful to develop methods for controlling F levels in tea leaves. We generated a comprehensive RNA-seq dataset from tea plants grown at various F levels for different durations by hydroponics, aiming at providing information on mechanism of F metabolism in tea plant. Besides raw reads of the RNA-seq dataset, we present assembled unigenes and aligned unigenes with annotations versus the Gene Ontology (GO) databases, Kyoto Encyclopaedia of Genes and Genomes (KEGG) databases, and Nonredundant (Nr) protein databases with low e-values. 69,488 unigenes were obtained in total, in which 40,894 were given Nr annotations. Nature Publishing Group 2018-09-25 /pmc/articles/PMC6154286/ /pubmed/30251991 http://dx.doi.org/10.1038/sdata.2018.194 Text en Copyright © 2018, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article. |
spellingShingle | Data Descriptor Li, Qing-Sheng Li, Xu-Min Qiao, Ru-Ying Shen, En-Hui Lin, Xiao-Ming Lu, Jian-Liang Ye, Jian-Hui Liang, Yue-Rong Zheng, Xin-Qiang De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments |
title | De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments |
title_full | De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments |
title_fullStr | De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments |
title_full_unstemmed | De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments |
title_short | De novo transcriptome assembly of fluorine accumulator tea plant Camellia sinensis with fluoride treatments |
title_sort | de novo transcriptome assembly of fluorine accumulator tea plant camellia sinensis with fluoride treatments |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6154286/ https://www.ncbi.nlm.nih.gov/pubmed/30251991 http://dx.doi.org/10.1038/sdata.2018.194 |
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