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Clinical prediction of HBV and HCV related hepatic fibrosis using machine learning

Clinical prediction of advanced hepatic fibrosis (HF) and cirrhosis has long been challenging due to the gold standard, liver biopsy, being an invasive approach with certain limitations. Less invasive blood test tandem with a cutting-edge machine learning algorithm shows promising diagnostic potenti...

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Autores principales: Wei, Runmin, Wang, Jingye, Wang, Xiaoning, Xie, Guoxiang, Wang, Yixing, Zhang, Hua, Peng, Cheng-Yuan, Rajani, Cynthia, Kwee, Sandi, Liu, Ping, Jia, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6154783/
https://www.ncbi.nlm.nih.gov/pubmed/30100397
http://dx.doi.org/10.1016/j.ebiom.2018.07.041
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author Wei, Runmin
Wang, Jingye
Wang, Xiaoning
Xie, Guoxiang
Wang, Yixing
Zhang, Hua
Peng, Cheng-Yuan
Rajani, Cynthia
Kwee, Sandi
Liu, Ping
Jia, Wei
author_facet Wei, Runmin
Wang, Jingye
Wang, Xiaoning
Xie, Guoxiang
Wang, Yixing
Zhang, Hua
Peng, Cheng-Yuan
Rajani, Cynthia
Kwee, Sandi
Liu, Ping
Jia, Wei
author_sort Wei, Runmin
collection PubMed
description Clinical prediction of advanced hepatic fibrosis (HF) and cirrhosis has long been challenging due to the gold standard, liver biopsy, being an invasive approach with certain limitations. Less invasive blood test tandem with a cutting-edge machine learning algorithm shows promising diagnostic potential. In this study, we constructed and compared machine learning methods with the FIB-4 score in a discovery dataset (n = 490) of hepatitis B virus (HBV) patients. Models were validated in an independent HBV dataset (n = 86). We further employed these models on two independent hepatitis C virus (HCV) datasets (n = 254 and 230) to examine their applicability. In the discovery data, gradient boosting (GB) stably outperformed other methods as well as FIB-4 scores (p < .001) in the prediction of advanced HF and cirrhosis. In the HBV validation dataset, for classification between early and advanced HF, the area under receiver operating characteristic curves (AUROC) of GB model was 0.918, while FIB-4 was 0.841; for classification between non-cirrhosis and cirrhosis, GB showed AUROC of 0.871, while FIB-4 was 0.830. Additionally, GB-based prediction demonstrated good classification capacity on two HCV datasets while higher cutoffs for both GB and FIB-4 scores were required to achieve comparable specificity and sensitivity. Using the same parameters as FIB-4, the GB-based prediction system demonstrated steady improvements relative to FIB-4 in HBV and HCV cohorts with different cutoff values required in different etiological groups. A user-friendly web tool, LiveBoost, makes our prediction models freely accessible for further clinical studies and applications.
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spelling pubmed-61547832018-09-26 Clinical prediction of HBV and HCV related hepatic fibrosis using machine learning Wei, Runmin Wang, Jingye Wang, Xiaoning Xie, Guoxiang Wang, Yixing Zhang, Hua Peng, Cheng-Yuan Rajani, Cynthia Kwee, Sandi Liu, Ping Jia, Wei EBioMedicine Research paper Clinical prediction of advanced hepatic fibrosis (HF) and cirrhosis has long been challenging due to the gold standard, liver biopsy, being an invasive approach with certain limitations. Less invasive blood test tandem with a cutting-edge machine learning algorithm shows promising diagnostic potential. In this study, we constructed and compared machine learning methods with the FIB-4 score in a discovery dataset (n = 490) of hepatitis B virus (HBV) patients. Models were validated in an independent HBV dataset (n = 86). We further employed these models on two independent hepatitis C virus (HCV) datasets (n = 254 and 230) to examine their applicability. In the discovery data, gradient boosting (GB) stably outperformed other methods as well as FIB-4 scores (p < .001) in the prediction of advanced HF and cirrhosis. In the HBV validation dataset, for classification between early and advanced HF, the area under receiver operating characteristic curves (AUROC) of GB model was 0.918, while FIB-4 was 0.841; for classification between non-cirrhosis and cirrhosis, GB showed AUROC of 0.871, while FIB-4 was 0.830. Additionally, GB-based prediction demonstrated good classification capacity on two HCV datasets while higher cutoffs for both GB and FIB-4 scores were required to achieve comparable specificity and sensitivity. Using the same parameters as FIB-4, the GB-based prediction system demonstrated steady improvements relative to FIB-4 in HBV and HCV cohorts with different cutoff values required in different etiological groups. A user-friendly web tool, LiveBoost, makes our prediction models freely accessible for further clinical studies and applications. Elsevier 2018-08-10 /pmc/articles/PMC6154783/ /pubmed/30100397 http://dx.doi.org/10.1016/j.ebiom.2018.07.041 Text en © 2018 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research paper
Wei, Runmin
Wang, Jingye
Wang, Xiaoning
Xie, Guoxiang
Wang, Yixing
Zhang, Hua
Peng, Cheng-Yuan
Rajani, Cynthia
Kwee, Sandi
Liu, Ping
Jia, Wei
Clinical prediction of HBV and HCV related hepatic fibrosis using machine learning
title Clinical prediction of HBV and HCV related hepatic fibrosis using machine learning
title_full Clinical prediction of HBV and HCV related hepatic fibrosis using machine learning
title_fullStr Clinical prediction of HBV and HCV related hepatic fibrosis using machine learning
title_full_unstemmed Clinical prediction of HBV and HCV related hepatic fibrosis using machine learning
title_short Clinical prediction of HBV and HCV related hepatic fibrosis using machine learning
title_sort clinical prediction of hbv and hcv related hepatic fibrosis using machine learning
topic Research paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6154783/
https://www.ncbi.nlm.nih.gov/pubmed/30100397
http://dx.doi.org/10.1016/j.ebiom.2018.07.041
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