Cargando…
Towards exact molecular dynamics simulations with machine-learned force fields
Molecular dynamics (MD) simulations employing classical force fields constitute the cornerstone of contemporary atomistic modeling in chemistry, biology, and materials science. However, the predictive power of these simulations is only as good as the underlying interatomic potential. Classical poten...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6155327/ https://www.ncbi.nlm.nih.gov/pubmed/30250077 http://dx.doi.org/10.1038/s41467-018-06169-2 |
_version_ | 1783357877174403072 |
---|---|
author | Chmiela, Stefan Sauceda, Huziel E. Müller, Klaus-Robert Tkatchenko, Alexandre |
author_facet | Chmiela, Stefan Sauceda, Huziel E. Müller, Klaus-Robert Tkatchenko, Alexandre |
author_sort | Chmiela, Stefan |
collection | PubMed |
description | Molecular dynamics (MD) simulations employing classical force fields constitute the cornerstone of contemporary atomistic modeling in chemistry, biology, and materials science. However, the predictive power of these simulations is only as good as the underlying interatomic potential. Classical potentials often fail to faithfully capture key quantum effects in molecules and materials. Here we enable the direct construction of flexible molecular force fields from high-level ab initio calculations by incorporating spatial and temporal physical symmetries into a gradient-domain machine learning (sGDML) model in an automatic data-driven way. The developed sGDML approach faithfully reproduces global force fields at quantum-chemical CCSD(T) level of accuracy and allows converged molecular dynamics simulations with fully quantized electrons and nuclei. We present MD simulations, for flexible molecules with up to a few dozen atoms and provide insights into the dynamical behavior of these molecules. Our approach provides the key missing ingredient for achieving spectroscopic accuracy in molecular simulations. |
format | Online Article Text |
id | pubmed-6155327 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-61553272018-09-28 Towards exact molecular dynamics simulations with machine-learned force fields Chmiela, Stefan Sauceda, Huziel E. Müller, Klaus-Robert Tkatchenko, Alexandre Nat Commun Article Molecular dynamics (MD) simulations employing classical force fields constitute the cornerstone of contemporary atomistic modeling in chemistry, biology, and materials science. However, the predictive power of these simulations is only as good as the underlying interatomic potential. Classical potentials often fail to faithfully capture key quantum effects in molecules and materials. Here we enable the direct construction of flexible molecular force fields from high-level ab initio calculations by incorporating spatial and temporal physical symmetries into a gradient-domain machine learning (sGDML) model in an automatic data-driven way. The developed sGDML approach faithfully reproduces global force fields at quantum-chemical CCSD(T) level of accuracy and allows converged molecular dynamics simulations with fully quantized electrons and nuclei. We present MD simulations, for flexible molecules with up to a few dozen atoms and provide insights into the dynamical behavior of these molecules. Our approach provides the key missing ingredient for achieving spectroscopic accuracy in molecular simulations. Nature Publishing Group UK 2018-09-24 /pmc/articles/PMC6155327/ /pubmed/30250077 http://dx.doi.org/10.1038/s41467-018-06169-2 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Chmiela, Stefan Sauceda, Huziel E. Müller, Klaus-Robert Tkatchenko, Alexandre Towards exact molecular dynamics simulations with machine-learned force fields |
title | Towards exact molecular dynamics simulations with machine-learned force fields |
title_full | Towards exact molecular dynamics simulations with machine-learned force fields |
title_fullStr | Towards exact molecular dynamics simulations with machine-learned force fields |
title_full_unstemmed | Towards exact molecular dynamics simulations with machine-learned force fields |
title_short | Towards exact molecular dynamics simulations with machine-learned force fields |
title_sort | towards exact molecular dynamics simulations with machine-learned force fields |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6155327/ https://www.ncbi.nlm.nih.gov/pubmed/30250077 http://dx.doi.org/10.1038/s41467-018-06169-2 |
work_keys_str_mv | AT chmielastefan towardsexactmoleculardynamicssimulationswithmachinelearnedforcefields AT saucedahuziele towardsexactmoleculardynamicssimulationswithmachinelearnedforcefields AT mullerklausrobert towardsexactmoleculardynamicssimulationswithmachinelearnedforcefields AT tkatchenkoalexandre towardsexactmoleculardynamicssimulationswithmachinelearnedforcefields |