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Towards exact molecular dynamics simulations with machine-learned force fields

Molecular dynamics (MD) simulations employing classical force fields constitute the cornerstone of contemporary atomistic modeling in chemistry, biology, and materials science. However, the predictive power of these simulations is only as good as the underlying interatomic potential. Classical poten...

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Autores principales: Chmiela, Stefan, Sauceda, Huziel E., Müller, Klaus-Robert, Tkatchenko, Alexandre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6155327/
https://www.ncbi.nlm.nih.gov/pubmed/30250077
http://dx.doi.org/10.1038/s41467-018-06169-2
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author Chmiela, Stefan
Sauceda, Huziel E.
Müller, Klaus-Robert
Tkatchenko, Alexandre
author_facet Chmiela, Stefan
Sauceda, Huziel E.
Müller, Klaus-Robert
Tkatchenko, Alexandre
author_sort Chmiela, Stefan
collection PubMed
description Molecular dynamics (MD) simulations employing classical force fields constitute the cornerstone of contemporary atomistic modeling in chemistry, biology, and materials science. However, the predictive power of these simulations is only as good as the underlying interatomic potential. Classical potentials often fail to faithfully capture key quantum effects in molecules and materials. Here we enable the direct construction of flexible molecular force fields from high-level ab initio calculations by incorporating spatial and temporal physical symmetries into a gradient-domain machine learning (sGDML) model in an automatic data-driven way. The developed sGDML approach faithfully reproduces global force fields at quantum-chemical CCSD(T) level of accuracy and allows converged molecular dynamics simulations with fully quantized electrons and nuclei. We present MD simulations, for flexible molecules with up to a few dozen atoms and provide insights into the dynamical behavior of these molecules. Our approach provides the key missing ingredient for achieving spectroscopic accuracy in molecular simulations.
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spelling pubmed-61553272018-09-28 Towards exact molecular dynamics simulations with machine-learned force fields Chmiela, Stefan Sauceda, Huziel E. Müller, Klaus-Robert Tkatchenko, Alexandre Nat Commun Article Molecular dynamics (MD) simulations employing classical force fields constitute the cornerstone of contemporary atomistic modeling in chemistry, biology, and materials science. However, the predictive power of these simulations is only as good as the underlying interatomic potential. Classical potentials often fail to faithfully capture key quantum effects in molecules and materials. Here we enable the direct construction of flexible molecular force fields from high-level ab initio calculations by incorporating spatial and temporal physical symmetries into a gradient-domain machine learning (sGDML) model in an automatic data-driven way. The developed sGDML approach faithfully reproduces global force fields at quantum-chemical CCSD(T) level of accuracy and allows converged molecular dynamics simulations with fully quantized electrons and nuclei. We present MD simulations, for flexible molecules with up to a few dozen atoms and provide insights into the dynamical behavior of these molecules. Our approach provides the key missing ingredient for achieving spectroscopic accuracy in molecular simulations. Nature Publishing Group UK 2018-09-24 /pmc/articles/PMC6155327/ /pubmed/30250077 http://dx.doi.org/10.1038/s41467-018-06169-2 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Chmiela, Stefan
Sauceda, Huziel E.
Müller, Klaus-Robert
Tkatchenko, Alexandre
Towards exact molecular dynamics simulations with machine-learned force fields
title Towards exact molecular dynamics simulations with machine-learned force fields
title_full Towards exact molecular dynamics simulations with machine-learned force fields
title_fullStr Towards exact molecular dynamics simulations with machine-learned force fields
title_full_unstemmed Towards exact molecular dynamics simulations with machine-learned force fields
title_short Towards exact molecular dynamics simulations with machine-learned force fields
title_sort towards exact molecular dynamics simulations with machine-learned force fields
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6155327/
https://www.ncbi.nlm.nih.gov/pubmed/30250077
http://dx.doi.org/10.1038/s41467-018-06169-2
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