Cargando…

Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica

Genome duplication is widespread in wild and crop plants. However, little is known about genome-wide selection in polyploids due to the complexity of duplicated genomes. In polyploids, the patterns of purifying selection and adaptive substitutions may be affected by masking owing to duplicated genes...

Descripción completa

Detalles Bibliográficos
Autores principales:	Paape, Timothy, Briskine, Roman V., Halstead-Nussloch, Gwyneth, Lischer, Heidi E. L., Shimizu-Inatsugi, Rie, Hatakeyama, Masaomi, Tanaka, Kenta, Nishiyama, Tomoaki, Sabirov, Renat, Sese, Jun, Shimizu, Kentaro K.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2018
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6156220/ https://www.ncbi.nlm.nih.gov/pubmed/30254374 http://dx.doi.org/10.1038/s41467-018-06108-1

Ejemplares similares

Conserved but Attenuated Parental Gene Expression in Allopolyploids: Constitutive Zinc Hyperaccumulation in the Allotetraploid Arabidopsis kamchatica
por: Paape, Timothy, et al.
Publicado: (2016)

Dominance in self-compatibility between subgenomes of allopolyploid Arabidopsis kamchatica shown by transgenic restoration of self-incompatibility
por: Yew, Chow-Lih, et al.
Publicado: (2023)

Fine‐scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species
por: Akiyama, Reiko, et al.
Publicado: (2020)

Phenotypic variation of a new synthetic allotetraploid Arabidopsis kamchatica enhanced in natural environment
por: Shimizu-Inatsugi, Rie, et al.
Publicado: (2023)

Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis
por: Akama, Satoru, et al.
Publicado: (2014)

Homeolog expression quantification methods for allopolyploids
por: Kuo, Tony C Y, et al.
Publicado: (2018)

Multiple Wheat Genomes Reveal Novel Gli-2 Sublocus Location and Variation of Celiac Disease Epitopes in Duplicated α-Gliadin Genes
por: Halstead-Nussloch, Gwyneth, et al.
Publicado: (2021)

Trait-dependent resemblance of the flowering phenology and floral morphology of the allopolyploid Cardamine flexuosa to those of the parental diploids in natural habitats
por: Akiyama, Reiko, et al.
Publicado: (2020)

Recent Loss of Self-Incompatibility by Degradation of the Male Component in Allotetraploid Arabidopsis kamchatica
por: Tsuchimatsu, Takashi, et al.
Publicado: (2012)

Subgenome Discrimination in Brassica and Raphanus Allopolyploids Using Microsatellites
por: Campomayor, Nicole Bon, et al.
Publicado: (2021)

Experimental and Field Data Support Range Expansion in an Allopolyploid Arabidopsis Owing to Parental Legacy of Heavy Metal Hyperaccumulation
por: Paape, Timothy, et al.
Publicado: (2020)

Impact of the acquired subgenome on the transcriptional landscape in Brettanomyces bruxellensis allopolyploids
por: Jallet, Arthur, et al.
Publicado: (2023)

Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus
por: Bird, Kevin A., et al.
Publicado: (2021)

A Recently Formed Triploid Cardamine insueta Inherits Leaf Vivipary and Submergence Tolerance Traits of Parents
por: Sun, Jianqiang, et al.
Publicado: (2020)

Genet assignment and population structure analysis in a clonal forest-floor herb, Cardamine leucantha, using RAD-seq
por: Tsujimoto, Michiaki, et al.
Publicado: (2019)

Seasonal pigment fluctuation in diploid and polyploid Arabidopsis revealed by machine learning-based phenotyping method PlantServation
por: Akiyama, Reiko, et al.
Publicado: (2023)

Biased gene expression reveals the contribution of subgenome to altitude adaptation in allopolyploid Isoetes sinensis
por: Wei, Pei, et al.
Publicado: (2022)

Subgenome-aware analyses suggest a reticulate allopolyploidization origin in three Papaver genomes
por: Zhang, Ren-Gang, et al.
Publicado: (2023)

Pangenome of water caltrop reveals structural variations and asymmetric subgenome divergence after allopolyploidization
por: Zhang, Xinyi, et al.
Publicado: (2023)

Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton (Gossypium) and Unequally between Subgenomes
por: Conover, Justin L, et al.
Publicado: (2022)

Asymmetric subgenomic chromatin architecture impacts on gene expression in resynthesized and natural allopolyploid Brassica napus
por: Li, Zeyu, et al.
Publicado: (2022)

Reply to “Subgenome-aware analyses suggest a reticulate allopolyploidization origin in three Papaver genomes”
por: Yang, Xiaofei, et al.
Publicado: (2023)

ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw
por: Milosavljevic, Stefan, et al.
Publicado: (2021)

A low-coverage 3′ RNA-seq to detect homeolog expression in polyploid wheat
por: Sun, Jianqiang, et al.
Publicado: (2023)

Global transcriptome analysis of allopolyploidization reveals large-scale repression of the D-subgenome in synthetic hexaploid wheat
por: Vasudevan, Akshaya, et al.
Publicado: (2023)

Female sterility associated with increased clonal propagation suggests a unique combination of androdioecy and asexual reproduction in populations of Cardamine amara (Brassicaceae)
por: Tedder, Andrew, et al.
Publicado: (2015)

Geographic Variation in Genomic Signals of Admixture Between Two Closely Related European Sepsid Fly Species
por: Giesen, Athene, et al.
Publicado: (2023)

PRKCQ promotes oncogenic growth and anoikis resistance of a subset of triple-negative breast cancer cells
por: Byerly, Jessica, et al.
Publicado: (2016)

Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris)
por: Kryvokhyzha, Dmytro, et al.
Publicado: (2019)

Distinct nucleotide patterns among three subgenomes of bread wheat and their potential origins during domestication after allopolyploidization
por: Zhao, Yan, et al.
Publicado: (2020)

LHP1-mediated epigenetic buffering of subgenome diversity and defense responses confers genome plasticity and adaptability in allopolyploid wheat
por: Li, Zijuan, et al.
Publicado: (2023)

Artificial selection reveals the role of transcriptional constraints in the maintenance of life history variation
por: Pick, Joel L., et al.
Publicado: (2020)

Reference-guided de novo assembly approach improves genome reconstruction for related species
por: Lischer, Heidi E. L., et al.
Publicado: (2017)

PTK6 inhibition promotes apoptosis of Lapatinib-resistant Her2(+) breast cancer cells by inducing Bim
por: Park, Sun Hee, et al.
Publicado: (2015)

Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana
por: Sato, Yasuhiro, et al.
Publicado: (2019)

Positional bias in variant calls against draft reference assemblies
por: Briskine, Roman V., et al.
Publicado: (2017)

Genome size variation and evolution in allotetraploid Arabidopsis kamchatica and its parents, Arabidopsis lyrata and Arabidopsis halleri
por: Wolf, Diana E., et al.
Publicado: (2014)

Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias
por: Li, Lin, et al.
Publicado: (2016)

Efficient Detection of Novel Nuclear Markers for Brassicaceae by Transcriptome Sequencing
por: Stockenhuber, Reinhold, et al.
Publicado: (2015)

Homoeolog-specific activation of genes for heat acclimation in the allopolyploid grass Brachypodium hybridum
por: Takahagi, Kotaro, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_rm8p901iq8p0sks7tm3vmtoemu