Cargando…

Logistic Bayesian LASSO for detecting association combining family and case-control data

Because of the limited information from the GAW20 samples when only case-control or trio data are considered, we propose eLBL, an extension of the Logistic Bayesian LASSO (least absolute shrinkage and selection operator) methodology so that both types of data can be analyzed jointly in the hope of o...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhou, Xiaofei, Wang, Meng, Zhang, Han, Stewart, William C. L., Lin, Shili
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2018
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6156907/ https://www.ncbi.nlm.nih.gov/pubmed/30263052 http://dx.doi.org/10.1186/s12919-018-0139-4

Ejemplares similares

Evaluation of logistic Bayesian LASSO for identifying association with rare haplotypes
por: Biswas, Swati, et al.
Publicado: (2014)

Detecting longitudinal effects of haplotypes and smoking on hypertension using B-splines and Bayesian LASSO
por: Xia, Shuang, et al.
Publicado: (2014)

Logistic Bayesian LASSO for Genetic Association Analysis of Data from Complex Sampling Designs
por: Zhang, Yuan, et al.
Publicado: (2017)

Bayesian Lasso and multinomial logistic regression on GPU
por: Češnovar, Rok, et al.
Publicado: (2017)

Analysis of genome-wide association data by large-scale Bayesian logistic regression
por: Wang, Yuanjia, et al.
Publicado: (2009)

Detecting disease-causing genes by LASSO-Patternsearch algorithm
por: Shi, Weiliang, et al.
Publicado: (2007)

Using LASSO regression to detect predictive aggregate effects in genetic studies
por: Fontanarosa, Joel B, et al.
Publicado: (2011)

Empirical Bayesian LASSO-logistic regression for multiple binary trait locus mapping
por: Huang, Anhui, et al.
Publicado: (2013)

A new Bayesian approach incorporating covariate information for heterogeneity and its comparison with HLOD
por: Biswas, Swati, et al.
Publicado: (2005)

An Improved Version of Logistic Bayesian LASSO for Detecting Rare Haplotype-Environment Interactions with Application to Lung Cancer
por: Zhang, Yuan, et al.
Publicado: (2015)

Combining least absolute shrinkage and selection operator (LASSO) and principal-components analysis for detection of gene-gene interactions in genome-wide association studies
por: D'Angelo, Gina M, et al.
Publicado: (2009)

LASSO model selection with post-processing for a genome-wide association study data set
por: Motyer, Allan J, et al.
Publicado: (2011)

Detection of imprinting and heterogeneous maternal effects on high blood pressure using Framingham Heart Study data
por: Yang, Jingyuan, et al.
Publicado: (2009)

Regularized group regression methods for genomic prediction: Bridge, MCP, SCAD, group bridge, group lasso, sparse group lasso, group MCP and group SCAD
por: Ogutu, Joseph O, et al.
Publicado: (2014)

A logistic mixture model for a family-based association study
por: Xing, Guan, et al.
Publicado: (2007)

Detecting single-nucleotide polymorphism by single-nucleotide polymorphism interactions in rheumatoid arthritis using a two-step approach with machine learning and a Bayesian threshold least absolute shrinkage and selection operator (LASSO) model
por: González-Recio, Oscar, et al.
Publicado: (2009)

Bayesian hierarchical modeling of means and covariances of gene expression data within families
por: Pique-Regi, Roger, et al.
Publicado: (2007)

Alternative strategies for selecting subsets of predicting SNPs by LASSO-LARS procedure
por: Usai, M Graziano, et al.
Publicado: (2012)

Identifying rare variant associations in population-based and family-based designs
por: Turkmen, Asuman S, et al.
Publicado: (2014)

Comparison between single-marker analysis using Merlin and multi-marker analysis using LASSO for Framingham simulated data
por: Sung, Yun Ju, et al.
Publicado: (2009)

A combined association test for rare variants using family and case-control data
por: Lin, Peng-Lin, et al.
Publicado: (2016)

A LASSO-based approach to analyzing rare variants in genetic association studies
por: Brennan, Jennifer S, et al.
Publicado: (2011)

Scoring relevancy of features based on combinatorial analysis of Lasso with application to lymphoma diagnosis
por: Zare, Habil, et al.
Publicado: (2013)

Application of Bayesian regression with singular value decomposition method in association studies for sequence data
por: Kwon, Soonil, et al.
Publicado: (2011)

Evaluation of a LASSO regression approach on the unrelated samples of Genetic Analysis Workshop 17
por: Guo, Wei, et al.
Publicado: (2011)

Comparing machine learning and logistic regression methods for predicting hypertension using a combination of gene expression and next-generation sequencing data
por: Held, Elizabeth, et al.
Publicado: (2016)

Gene-based partial least-squares approaches for detecting rare variant associations with complex traits
por: Turkmen, Asuman S, et al.
Publicado: (2011)

Detection of imprinting effects for hypertension based on general pedigrees utilizing all affected and unaffected individuals
por: Zhang, Fangyuan, et al.
Publicado: (2014)

A likelihood-based procedure for obtaining confidence intervals of disease loci with general pedigree data
por: Wan, Shuyan, et al.
Publicado: (2007)

A LASSO penalized regression approach for genome-wide association analyses using related individuals: application to the Genetic Analysis Workshop 19 simulated data
por: Papachristou, Charalampos, et al.
Publicado: (2016)

Logistic regression trees for initial selection of interesting loci in case-control studies
por: Nickolov, Radoslav Z, et al.
Publicado: (2007)

Genomic selection using regularized linear regression models: ridge regression, lasso, elastic net and their extensions
por: Ogutu, Joseph O, et al.
Publicado: (2012)

On combining family- and population-based sequencing data
por: Katsumata, Yuriko, et al.
Publicado: (2016)

Analysis of Twitter data with the Bayesian fused graphical lasso
por: Aflakparast, Mehran, et al.
Publicado: (2020)

Logistic LASSO Regression for Dietary Intakes and Breast Cancer
por: McEligot, Archana J., et al.
Publicado: (2020)

Using a Bayesian latent variable approach to detect pleiotropy in the Genetic Analysis Workshop 18 data
por: Xu, Lizhen, et al.
Publicado: (2014)

Family-based Bayesian collapsing method for rare-variant association study
por: He, Liang, et al.
Publicado: (2014)

Linkage analysis of the simulated data – evaluations and comparisons of methods
por: Biswas, Swati, et al.
Publicado: (2003)

Analysis of North American Rheumatoid Arthritis Consortium data using a penalized logistic regression approach
por: Croiseau, Pascal, et al.
Publicado: (2009)

Haplotype association analysis of North American Rheumatoid Arthritis Consortium data using a generalized linear model with regularization
por: Guo, Wei, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_ceb8skjtfufn8ha6bffakv87ab