MetaboDiff: an R package for differential metabolomic analysis

SUMMARY: Comparative metabolomics comes of age through commercial vendors offering metabolomics for translational researchers outside the mass spectrometry field. The MetaboDiff packages aims to provide a low-level entry to differential metabolomic analysis with R by starting off with the table of m...

Descripción completa

Detalles Bibliográficos
Autores principales: Mock, Andreas, Warta, Rolf, Dettling, Steffen, Brors, Benedikt, Jäger, Dirk, Herold-Mende, Christel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6157071/
https://www.ncbi.nlm.nih.gov/pubmed/29718102
http://dx.doi.org/10.1093/bioinformatics/bty344
_version_ 1783358203942141952
author Mock, Andreas
Warta, Rolf
Dettling, Steffen
Brors, Benedikt
Jäger, Dirk
Herold-Mende, Christel
author_facet Mock, Andreas
Warta, Rolf
Dettling, Steffen
Brors, Benedikt
Jäger, Dirk
Herold-Mende, Christel
author_sort Mock, Andreas
collection PubMed
description SUMMARY: Comparative metabolomics comes of age through commercial vendors offering metabolomics for translational researchers outside the mass spectrometry field. The MetaboDiff packages aims to provide a low-level entry to differential metabolomic analysis with R by starting off with the table of metabolite measurements. As a key functionality, MetaboDiffs offers the exploration of sample traits in a data-derived metabolic correlation network. AVAILABILITY AND IMPLEMENTATION: The MetaboDiff R package is platform-independent, available at http://github.com/andreasmock/MetaboDiff/ and released under the MIT licence. The package documentation comprises a step-by-step markdown tutorial. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
format Online
Article
Text
id pubmed-6157071
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-61570712018-10-01 MetaboDiff: an R package for differential metabolomic analysis Mock, Andreas Warta, Rolf Dettling, Steffen Brors, Benedikt Jäger, Dirk Herold-Mende, Christel Bioinformatics Applications Notes SUMMARY: Comparative metabolomics comes of age through commercial vendors offering metabolomics for translational researchers outside the mass spectrometry field. The MetaboDiff packages aims to provide a low-level entry to differential metabolomic analysis with R by starting off with the table of metabolite measurements. As a key functionality, MetaboDiffs offers the exploration of sample traits in a data-derived metabolic correlation network. AVAILABILITY AND IMPLEMENTATION: The MetaboDiff R package is platform-independent, available at http://github.com/andreasmock/MetaboDiff/ and released under the MIT licence. The package documentation comprises a step-by-step markdown tutorial. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2018-10-01 2018-04-26 /pmc/articles/PMC6157071/ /pubmed/29718102 http://dx.doi.org/10.1093/bioinformatics/bty344 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Mock, Andreas
Warta, Rolf
Dettling, Steffen
Brors, Benedikt
Jäger, Dirk
Herold-Mende, Christel
MetaboDiff: an R package for differential metabolomic analysis
title MetaboDiff: an R package for differential metabolomic analysis
title_full MetaboDiff: an R package for differential metabolomic analysis
title_fullStr MetaboDiff: an R package for differential metabolomic analysis
title_full_unstemmed MetaboDiff: an R package for differential metabolomic analysis
title_short MetaboDiff: an R package for differential metabolomic analysis
title_sort metabodiff: an r package for differential metabolomic analysis
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6157071/
https://www.ncbi.nlm.nih.gov/pubmed/29718102
http://dx.doi.org/10.1093/bioinformatics/bty344
work_keys_str_mv AT mockandreas metabodiffanrpackagefordifferentialmetabolomicanalysis
AT wartarolf metabodiffanrpackagefordifferentialmetabolomicanalysis
AT dettlingsteffen metabodiffanrpackagefordifferentialmetabolomicanalysis
AT brorsbenedikt metabodiffanrpackagefordifferentialmetabolomicanalysis
AT jagerdirk metabodiffanrpackagefordifferentialmetabolomicanalysis
AT heroldmendechristel metabodiffanrpackagefordifferentialmetabolomicanalysis

Ejemplares similares