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c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans
The OpenWorm project has the ambitious goal of producing a highly detailed in silico model of the nematode Caenorhabditis elegans. A crucial part of this work will be a model of the nervous system encompassing all known cell types and connections. The appropriate level of biophysical detail required...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6158223/ https://www.ncbi.nlm.nih.gov/pubmed/30201842 http://dx.doi.org/10.1098/rstb.2017.0379 |
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author | Gleeson, Padraig Lung, David Grosu, Radu Hasani, Ramin Larson, Stephen D. |
author_facet | Gleeson, Padraig Lung, David Grosu, Radu Hasani, Ramin Larson, Stephen D. |
author_sort | Gleeson, Padraig |
collection | PubMed |
description | The OpenWorm project has the ambitious goal of producing a highly detailed in silico model of the nematode Caenorhabditis elegans. A crucial part of this work will be a model of the nervous system encompassing all known cell types and connections. The appropriate level of biophysical detail required in the neuronal model to reproduce observed high-level behaviours in the worm has yet to be determined. For this reason, we have developed a framework, c302, that allows different instances of neuronal networks to be generated incorporating varying levels of anatomical and physiological detail, which can be investigated and refined independently or linked to other tools developed in the OpenWorm modelling toolchain. This article is part of a discussion meeting issue ‘Connectome to behaviour: modelling C. elegans at cellular resolution’. |
format | Online Article Text |
id | pubmed-6158223 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-61582232018-09-27 c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans Gleeson, Padraig Lung, David Grosu, Radu Hasani, Ramin Larson, Stephen D. Philos Trans R Soc Lond B Biol Sci Articles The OpenWorm project has the ambitious goal of producing a highly detailed in silico model of the nematode Caenorhabditis elegans. A crucial part of this work will be a model of the nervous system encompassing all known cell types and connections. The appropriate level of biophysical detail required in the neuronal model to reproduce observed high-level behaviours in the worm has yet to be determined. For this reason, we have developed a framework, c302, that allows different instances of neuronal networks to be generated incorporating varying levels of anatomical and physiological detail, which can be investigated and refined independently or linked to other tools developed in the OpenWorm modelling toolchain. This article is part of a discussion meeting issue ‘Connectome to behaviour: modelling C. elegans at cellular resolution’. The Royal Society 2018-10-19 2018-09-10 /pmc/articles/PMC6158223/ /pubmed/30201842 http://dx.doi.org/10.1098/rstb.2017.0379 Text en © 2018 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Articles Gleeson, Padraig Lung, David Grosu, Radu Hasani, Ramin Larson, Stephen D. c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans |
title | c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans |
title_full | c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans |
title_fullStr | c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans |
title_full_unstemmed | c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans |
title_short | c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans |
title_sort | c302: a multiscale framework for modelling the nervous system of caenorhabditis elegans |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6158223/ https://www.ncbi.nlm.nih.gov/pubmed/30201842 http://dx.doi.org/10.1098/rstb.2017.0379 |
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