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IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS

The IsoFishR application is a data reduction and analysis tool for laser-ablation strontium isotope data, following common best practices and providing reliable and reproducible results. Strontium isotope ratios ((87)Sr/(86)Sr) are a powerful geochemical tracer commonly applied in a wide range of sc...

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Autores principales: Willmes, Malte, Ransom, Katherine M., Lewis, Levi S., Denney, Christian T., Glessner, Justin J. G., Hobbs, James A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6160113/
https://www.ncbi.nlm.nih.gov/pubmed/30261018
http://dx.doi.org/10.1371/journal.pone.0204519
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author Willmes, Malte
Ransom, Katherine M.
Lewis, Levi S.
Denney, Christian T.
Glessner, Justin J. G.
Hobbs, James A.
author_facet Willmes, Malte
Ransom, Katherine M.
Lewis, Levi S.
Denney, Christian T.
Glessner, Justin J. G.
Hobbs, James A.
author_sort Willmes, Malte
collection PubMed
description The IsoFishR application is a data reduction and analysis tool for laser-ablation strontium isotope data, following common best practices and providing reliable and reproducible results. Strontium isotope ratios ((87)Sr/(86)Sr) are a powerful geochemical tracer commonly applied in a wide range of scientific fields and laser-ablation inductively coupled mass spectrometry is considered the method of choice to obtain spatially resolved (87)Sr/(86)Sr isotope ratios from a variety of sample materials. However, data reduction and analyses methods are variable between different research groups and research communities limiting reproducibility between studies. IsoFishR provides a platform to standardize these methods and can be used for both spot and time-resolved line transects. Furthermore, it provides advanced data analysis tools and filters for outlier removal, noise reduction, and visualization of time resolved data. The application can be downloaded from GitHub (https://github.com/MalteWillmes/IsoFishR) and the source code is available, encouraging future development and evolution of this software.
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spelling pubmed-61601132018-10-19 IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS Willmes, Malte Ransom, Katherine M. Lewis, Levi S. Denney, Christian T. Glessner, Justin J. G. Hobbs, James A. PLoS One Research Article The IsoFishR application is a data reduction and analysis tool for laser-ablation strontium isotope data, following common best practices and providing reliable and reproducible results. Strontium isotope ratios ((87)Sr/(86)Sr) are a powerful geochemical tracer commonly applied in a wide range of scientific fields and laser-ablation inductively coupled mass spectrometry is considered the method of choice to obtain spatially resolved (87)Sr/(86)Sr isotope ratios from a variety of sample materials. However, data reduction and analyses methods are variable between different research groups and research communities limiting reproducibility between studies. IsoFishR provides a platform to standardize these methods and can be used for both spot and time-resolved line transects. Furthermore, it provides advanced data analysis tools and filters for outlier removal, noise reduction, and visualization of time resolved data. The application can be downloaded from GitHub (https://github.com/MalteWillmes/IsoFishR) and the source code is available, encouraging future development and evolution of this software. Public Library of Science 2018-09-27 /pmc/articles/PMC6160113/ /pubmed/30261018 http://dx.doi.org/10.1371/journal.pone.0204519 Text en © 2018 Willmes et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Willmes, Malte
Ransom, Katherine M.
Lewis, Levi S.
Denney, Christian T.
Glessner, Justin J. G.
Hobbs, James A.
IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS
title IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS
title_full IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS
title_fullStr IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS
title_full_unstemmed IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS
title_short IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS
title_sort isofishr: an application for reproducible data reduction and analysis of strontium isotope ratios ((87)sr/(86)sr) obtained via laser-ablation mc-icp-ms
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6160113/
https://www.ncbi.nlm.nih.gov/pubmed/30261018
http://dx.doi.org/10.1371/journal.pone.0204519
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