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IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS
The IsoFishR application is a data reduction and analysis tool for laser-ablation strontium isotope data, following common best practices and providing reliable and reproducible results. Strontium isotope ratios ((87)Sr/(86)Sr) are a powerful geochemical tracer commonly applied in a wide range of sc...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6160113/ https://www.ncbi.nlm.nih.gov/pubmed/30261018 http://dx.doi.org/10.1371/journal.pone.0204519 |
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author | Willmes, Malte Ransom, Katherine M. Lewis, Levi S. Denney, Christian T. Glessner, Justin J. G. Hobbs, James A. |
author_facet | Willmes, Malte Ransom, Katherine M. Lewis, Levi S. Denney, Christian T. Glessner, Justin J. G. Hobbs, James A. |
author_sort | Willmes, Malte |
collection | PubMed |
description | The IsoFishR application is a data reduction and analysis tool for laser-ablation strontium isotope data, following common best practices and providing reliable and reproducible results. Strontium isotope ratios ((87)Sr/(86)Sr) are a powerful geochemical tracer commonly applied in a wide range of scientific fields and laser-ablation inductively coupled mass spectrometry is considered the method of choice to obtain spatially resolved (87)Sr/(86)Sr isotope ratios from a variety of sample materials. However, data reduction and analyses methods are variable between different research groups and research communities limiting reproducibility between studies. IsoFishR provides a platform to standardize these methods and can be used for both spot and time-resolved line transects. Furthermore, it provides advanced data analysis tools and filters for outlier removal, noise reduction, and visualization of time resolved data. The application can be downloaded from GitHub (https://github.com/MalteWillmes/IsoFishR) and the source code is available, encouraging future development and evolution of this software. |
format | Online Article Text |
id | pubmed-6160113 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-61601132018-10-19 IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS Willmes, Malte Ransom, Katherine M. Lewis, Levi S. Denney, Christian T. Glessner, Justin J. G. Hobbs, James A. PLoS One Research Article The IsoFishR application is a data reduction and analysis tool for laser-ablation strontium isotope data, following common best practices and providing reliable and reproducible results. Strontium isotope ratios ((87)Sr/(86)Sr) are a powerful geochemical tracer commonly applied in a wide range of scientific fields and laser-ablation inductively coupled mass spectrometry is considered the method of choice to obtain spatially resolved (87)Sr/(86)Sr isotope ratios from a variety of sample materials. However, data reduction and analyses methods are variable between different research groups and research communities limiting reproducibility between studies. IsoFishR provides a platform to standardize these methods and can be used for both spot and time-resolved line transects. Furthermore, it provides advanced data analysis tools and filters for outlier removal, noise reduction, and visualization of time resolved data. The application can be downloaded from GitHub (https://github.com/MalteWillmes/IsoFishR) and the source code is available, encouraging future development and evolution of this software. Public Library of Science 2018-09-27 /pmc/articles/PMC6160113/ /pubmed/30261018 http://dx.doi.org/10.1371/journal.pone.0204519 Text en © 2018 Willmes et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Willmes, Malte Ransom, Katherine M. Lewis, Levi S. Denney, Christian T. Glessner, Justin J. G. Hobbs, James A. IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS |
title | IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS |
title_full | IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS |
title_fullStr | IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS |
title_full_unstemmed | IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS |
title_short | IsoFishR: An application for reproducible data reduction and analysis of strontium isotope ratios ((87)Sr/(86)Sr) obtained via laser-ablation MC-ICP-MS |
title_sort | isofishr: an application for reproducible data reduction and analysis of strontium isotope ratios ((87)sr/(86)sr) obtained via laser-ablation mc-icp-ms |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6160113/ https://www.ncbi.nlm.nih.gov/pubmed/30261018 http://dx.doi.org/10.1371/journal.pone.0204519 |
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