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The Energetic Viability of Δ(1)-Piperideine Dimerization in Lysine-derived Alkaloid Biosynthesis

Lys-derived alkaloids widely distributed in plant kingdom have received considerable attention and have been intensively studied; however, little is known about their biosynthetic mechanisms. In terms of the skeleton formation, for example, of quinolizidine alkaloid biosynthesis, only the very first...

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Autores principales: Sato, Hajime, Uchiyama, Masanobu, Saito, Kazuki, Yamazaki, Mami
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6161264/
https://www.ncbi.nlm.nih.gov/pubmed/30200334
http://dx.doi.org/10.3390/metabo8030048
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author Sato, Hajime
Uchiyama, Masanobu
Saito, Kazuki
Yamazaki, Mami
author_facet Sato, Hajime
Uchiyama, Masanobu
Saito, Kazuki
Yamazaki, Mami
author_sort Sato, Hajime
collection PubMed
description Lys-derived alkaloids widely distributed in plant kingdom have received considerable attention and have been intensively studied; however, little is known about their biosynthetic mechanisms. In terms of the skeleton formation, for example, of quinolizidine alkaloid biosynthesis, only the very first two steps have been identified and the later steps remain unknown. In addition, there is no available information on the number of enzymes and reactions required for their skeletal construction. The involvement of the [Formula: see text]-piperideine dimerization has been proposed for some of the Lys-derived alkaloid biosyntheses, but no enzymes for this dimerization reaction have been reported to date; moreover, it is not clear whether this dimerization reaction proceeds spontaneously or enzymatically. In this study, the energetic viability of the [Formula: see text]-piperideine dimerizations under neutral and acidic conditions was assessed using the density functional theory computations. In addition, a similar type of reaction in the dipiperidine indole alkaloid, nitramidine, biosynthesis was also investigated. Our findings will be useful to narrow down the candidate genes involved in the Lys-derived alkaloid biosynthesis.
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spelling pubmed-61612642018-09-28 The Energetic Viability of Δ(1)-Piperideine Dimerization in Lysine-derived Alkaloid Biosynthesis Sato, Hajime Uchiyama, Masanobu Saito, Kazuki Yamazaki, Mami Metabolites Article Lys-derived alkaloids widely distributed in plant kingdom have received considerable attention and have been intensively studied; however, little is known about their biosynthetic mechanisms. In terms of the skeleton formation, for example, of quinolizidine alkaloid biosynthesis, only the very first two steps have been identified and the later steps remain unknown. In addition, there is no available information on the number of enzymes and reactions required for their skeletal construction. The involvement of the [Formula: see text]-piperideine dimerization has been proposed for some of the Lys-derived alkaloid biosyntheses, but no enzymes for this dimerization reaction have been reported to date; moreover, it is not clear whether this dimerization reaction proceeds spontaneously or enzymatically. In this study, the energetic viability of the [Formula: see text]-piperideine dimerizations under neutral and acidic conditions was assessed using the density functional theory computations. In addition, a similar type of reaction in the dipiperidine indole alkaloid, nitramidine, biosynthesis was also investigated. Our findings will be useful to narrow down the candidate genes involved in the Lys-derived alkaloid biosynthesis. MDPI 2018-08-31 /pmc/articles/PMC6161264/ /pubmed/30200334 http://dx.doi.org/10.3390/metabo8030048 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Sato, Hajime
Uchiyama, Masanobu
Saito, Kazuki
Yamazaki, Mami
The Energetic Viability of Δ(1)-Piperideine Dimerization in Lysine-derived Alkaloid Biosynthesis
title The Energetic Viability of Δ(1)-Piperideine Dimerization in Lysine-derived Alkaloid Biosynthesis
title_full The Energetic Viability of Δ(1)-Piperideine Dimerization in Lysine-derived Alkaloid Biosynthesis
title_fullStr The Energetic Viability of Δ(1)-Piperideine Dimerization in Lysine-derived Alkaloid Biosynthesis
title_full_unstemmed The Energetic Viability of Δ(1)-Piperideine Dimerization in Lysine-derived Alkaloid Biosynthesis
title_short The Energetic Viability of Δ(1)-Piperideine Dimerization in Lysine-derived Alkaloid Biosynthesis
title_sort energetic viability of δ(1)-piperideine dimerization in lysine-derived alkaloid biosynthesis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6161264/
https://www.ncbi.nlm.nih.gov/pubmed/30200334
http://dx.doi.org/10.3390/metabo8030048
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