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Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data
Two of the central challenges of using mathematical models for predicting the spatiotemporal development of tumors is the lack of appropriate data to calibrate the parameters of the model, and quantitative characterization of the uncertainties in both the experimental data and the modeling process i...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6162291/ https://www.ncbi.nlm.nih.gov/pubmed/30266911 http://dx.doi.org/10.1038/s41598-018-32347-9 |
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author | Lima, E. A. B. F. Ghousifam, N. Ozkan, A. Oden, J. T. Shahmoradi, A. Rylander, M. N. Wohlmuth, B. Yankeelov, T. E. |
author_facet | Lima, E. A. B. F. Ghousifam, N. Ozkan, A. Oden, J. T. Shahmoradi, A. Rylander, M. N. Wohlmuth, B. Yankeelov, T. E. |
author_sort | Lima, E. A. B. F. |
collection | PubMed |
description | Two of the central challenges of using mathematical models for predicting the spatiotemporal development of tumors is the lack of appropriate data to calibrate the parameters of the model, and quantitative characterization of the uncertainties in both the experimental data and the modeling process itself. We present a sequence of experiments, with increasing complexity, designed to systematically calibrate the rates of apoptosis, proliferation, and necrosis, as well as mobility, within a phase-field tumor growth model. The in vitro experiments characterize the proliferation and death of human liver carcinoma cells under different initial cell concentrations, nutrient availabilities, and treatment conditions. A Bayesian framework is employed to quantify the uncertainties in model parameters. The average difference between the calibration and the data, across all time points is between 11.54% and 14.04% for the apoptosis experiments, 7.33% and 23.30% for the proliferation experiments, and 8.12% and 31.55% for the necrosis experiments. The results indicate the proposed experiment-computational approach is generalizable and appropriate for step-by-step calibration of multi-parameter models, yielding accurate estimations of model parameters related to rates of proliferation, apoptosis, and necrosis. |
format | Online Article Text |
id | pubmed-6162291 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-61622912018-10-02 Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data Lima, E. A. B. F. Ghousifam, N. Ozkan, A. Oden, J. T. Shahmoradi, A. Rylander, M. N. Wohlmuth, B. Yankeelov, T. E. Sci Rep Article Two of the central challenges of using mathematical models for predicting the spatiotemporal development of tumors is the lack of appropriate data to calibrate the parameters of the model, and quantitative characterization of the uncertainties in both the experimental data and the modeling process itself. We present a sequence of experiments, with increasing complexity, designed to systematically calibrate the rates of apoptosis, proliferation, and necrosis, as well as mobility, within a phase-field tumor growth model. The in vitro experiments characterize the proliferation and death of human liver carcinoma cells under different initial cell concentrations, nutrient availabilities, and treatment conditions. A Bayesian framework is employed to quantify the uncertainties in model parameters. The average difference between the calibration and the data, across all time points is between 11.54% and 14.04% for the apoptosis experiments, 7.33% and 23.30% for the proliferation experiments, and 8.12% and 31.55% for the necrosis experiments. The results indicate the proposed experiment-computational approach is generalizable and appropriate for step-by-step calibration of multi-parameter models, yielding accurate estimations of model parameters related to rates of proliferation, apoptosis, and necrosis. Nature Publishing Group UK 2018-09-28 /pmc/articles/PMC6162291/ /pubmed/30266911 http://dx.doi.org/10.1038/s41598-018-32347-9 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Lima, E. A. B. F. Ghousifam, N. Ozkan, A. Oden, J. T. Shahmoradi, A. Rylander, M. N. Wohlmuth, B. Yankeelov, T. E. Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data |
title | Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data |
title_full | Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data |
title_fullStr | Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data |
title_full_unstemmed | Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data |
title_short | Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data |
title_sort | calibration of multi-parameter models of avascular tumor growth using time resolved microscopy data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6162291/ https://www.ncbi.nlm.nih.gov/pubmed/30266911 http://dx.doi.org/10.1038/s41598-018-32347-9 |
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