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Long Non-Coding RNAs as Endogenous Target Mimics and Exploration of Their Role in Low Nutrient Stress Tolerance in Plants

Long non-coding RNA (lncRNA) research in plants has recently gained momentum taking cues from studies in animals systems. The availability of next-generation sequencing has enabled genome-wide identification of lncRNA in several plant species. Some lncRNAs are inhibitors of microRNA expression and h...

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Autores principales: Borah, Priyanka, Das, Antara, Milner, Matthew J., Ali, Arif, Bentley, Alison R., Pandey, Renu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6162444/
https://www.ncbi.nlm.nih.gov/pubmed/30223541
http://dx.doi.org/10.3390/genes9090459
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author Borah, Priyanka
Das, Antara
Milner, Matthew J.
Ali, Arif
Bentley, Alison R.
Pandey, Renu
author_facet Borah, Priyanka
Das, Antara
Milner, Matthew J.
Ali, Arif
Bentley, Alison R.
Pandey, Renu
author_sort Borah, Priyanka
collection PubMed
description Long non-coding RNA (lncRNA) research in plants has recently gained momentum taking cues from studies in animals systems. The availability of next-generation sequencing has enabled genome-wide identification of lncRNA in several plant species. Some lncRNAs are inhibitors of microRNA expression and have a function known as target mimicry with the sequestered transcript known as an endogenous target mimic (eTM). The lncRNAs identified to date show diverse mechanisms of gene regulation, most of which remain poorly understood. In this review, we discuss the role of identified putative lncRNAs that may act as eTMs for nutrient-responsive microRNAs (miRNAs) in plants. If functionally validated, these putative lncRNAs would enhance current understanding of the role of lncRNAs in nutrient homeostasis in plants.
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spelling pubmed-61624442018-10-10 Long Non-Coding RNAs as Endogenous Target Mimics and Exploration of Their Role in Low Nutrient Stress Tolerance in Plants Borah, Priyanka Das, Antara Milner, Matthew J. Ali, Arif Bentley, Alison R. Pandey, Renu Genes (Basel) Review Long non-coding RNA (lncRNA) research in plants has recently gained momentum taking cues from studies in animals systems. The availability of next-generation sequencing has enabled genome-wide identification of lncRNA in several plant species. Some lncRNAs are inhibitors of microRNA expression and have a function known as target mimicry with the sequestered transcript known as an endogenous target mimic (eTM). The lncRNAs identified to date show diverse mechanisms of gene regulation, most of which remain poorly understood. In this review, we discuss the role of identified putative lncRNAs that may act as eTMs for nutrient-responsive microRNAs (miRNAs) in plants. If functionally validated, these putative lncRNAs would enhance current understanding of the role of lncRNAs in nutrient homeostasis in plants. MDPI 2018-09-14 /pmc/articles/PMC6162444/ /pubmed/30223541 http://dx.doi.org/10.3390/genes9090459 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Borah, Priyanka
Das, Antara
Milner, Matthew J.
Ali, Arif
Bentley, Alison R.
Pandey, Renu
Long Non-Coding RNAs as Endogenous Target Mimics and Exploration of Their Role in Low Nutrient Stress Tolerance in Plants
title Long Non-Coding RNAs as Endogenous Target Mimics and Exploration of Their Role in Low Nutrient Stress Tolerance in Plants
title_full Long Non-Coding RNAs as Endogenous Target Mimics and Exploration of Their Role in Low Nutrient Stress Tolerance in Plants
title_fullStr Long Non-Coding RNAs as Endogenous Target Mimics and Exploration of Their Role in Low Nutrient Stress Tolerance in Plants
title_full_unstemmed Long Non-Coding RNAs as Endogenous Target Mimics and Exploration of Their Role in Low Nutrient Stress Tolerance in Plants
title_short Long Non-Coding RNAs as Endogenous Target Mimics and Exploration of Their Role in Low Nutrient Stress Tolerance in Plants
title_sort long non-coding rnas as endogenous target mimics and exploration of their role in low nutrient stress tolerance in plants
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6162444/
https://www.ncbi.nlm.nih.gov/pubmed/30223541
http://dx.doi.org/10.3390/genes9090459
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