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Chemical Reactivity Properties, pK(a) Values, AGEs Inhibitor Abilities and Bioactivity Scores of the Mirabamides A–H Peptides of Marine Origin Studied by Means of Conceptual DFT

The MN12SX density functional, in connection with the Def2TZVP basis set, was assessed, together with the SMD solvation model (Solvation Model based on the Density), for calculation of the molecular properties and structure of a group of peptides of marine origin named Mirabamides A–H. All the chemi...

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Autores principales: Frau, Juan, Flores-Holguín, Norma, Glossman-Mitnik, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6163382/
https://www.ncbi.nlm.nih.gov/pubmed/30154377
http://dx.doi.org/10.3390/md16090302
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author Frau, Juan
Flores-Holguín, Norma
Glossman-Mitnik, Daniel
author_facet Frau, Juan
Flores-Holguín, Norma
Glossman-Mitnik, Daniel
author_sort Frau, Juan
collection PubMed
description The MN12SX density functional, in connection with the Def2TZVP basis set, was assessed, together with the SMD solvation model (Solvation Model based on the Density), for calculation of the molecular properties and structure of a group of peptides of marine origin named Mirabamides A–H. All the chemical reactivity descriptors for the systems were calculated via Conceptual Density Functional Theory (CDFT). The active sites suitable for nucleophilic, electrophilic, and radical attacks were chosen by linking them with the Fukui function indices, nucleophilic and electrophilic Parr functions, and condensed Dual Descriptor [Formula: see text] , respectively. Additionally, the p [Formula: see text] values for the different peptides are predicted with great accuracy as well as the ability of the studied molecule in acting as an efficient inhibitor of the formation of Advanced Glycation Endproducts (AGEs), which constitutes a useful knowledge for the development of drugs for fighting Diabetes, Alzheimer and Parkinson diseases. Finally, the bioactivity scores for the Mirabamides A–H are predicted through different methodologies.
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spelling pubmed-61633822018-10-11 Chemical Reactivity Properties, pK(a) Values, AGEs Inhibitor Abilities and Bioactivity Scores of the Mirabamides A–H Peptides of Marine Origin Studied by Means of Conceptual DFT Frau, Juan Flores-Holguín, Norma Glossman-Mitnik, Daniel Mar Drugs Article The MN12SX density functional, in connection with the Def2TZVP basis set, was assessed, together with the SMD solvation model (Solvation Model based on the Density), for calculation of the molecular properties and structure of a group of peptides of marine origin named Mirabamides A–H. All the chemical reactivity descriptors for the systems were calculated via Conceptual Density Functional Theory (CDFT). The active sites suitable for nucleophilic, electrophilic, and radical attacks were chosen by linking them with the Fukui function indices, nucleophilic and electrophilic Parr functions, and condensed Dual Descriptor [Formula: see text] , respectively. Additionally, the p [Formula: see text] values for the different peptides are predicted with great accuracy as well as the ability of the studied molecule in acting as an efficient inhibitor of the formation of Advanced Glycation Endproducts (AGEs), which constitutes a useful knowledge for the development of drugs for fighting Diabetes, Alzheimer and Parkinson diseases. Finally, the bioactivity scores for the Mirabamides A–H are predicted through different methodologies. MDPI 2018-08-28 /pmc/articles/PMC6163382/ /pubmed/30154377 http://dx.doi.org/10.3390/md16090302 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Frau, Juan
Flores-Holguín, Norma
Glossman-Mitnik, Daniel
Chemical Reactivity Properties, pK(a) Values, AGEs Inhibitor Abilities and Bioactivity Scores of the Mirabamides A–H Peptides of Marine Origin Studied by Means of Conceptual DFT
title Chemical Reactivity Properties, pK(a) Values, AGEs Inhibitor Abilities and Bioactivity Scores of the Mirabamides A–H Peptides of Marine Origin Studied by Means of Conceptual DFT
title_full Chemical Reactivity Properties, pK(a) Values, AGEs Inhibitor Abilities and Bioactivity Scores of the Mirabamides A–H Peptides of Marine Origin Studied by Means of Conceptual DFT
title_fullStr Chemical Reactivity Properties, pK(a) Values, AGEs Inhibitor Abilities and Bioactivity Scores of the Mirabamides A–H Peptides of Marine Origin Studied by Means of Conceptual DFT
title_full_unstemmed Chemical Reactivity Properties, pK(a) Values, AGEs Inhibitor Abilities and Bioactivity Scores of the Mirabamides A–H Peptides of Marine Origin Studied by Means of Conceptual DFT
title_short Chemical Reactivity Properties, pK(a) Values, AGEs Inhibitor Abilities and Bioactivity Scores of the Mirabamides A–H Peptides of Marine Origin Studied by Means of Conceptual DFT
title_sort chemical reactivity properties, pk(a) values, ages inhibitor abilities and bioactivity scores of the mirabamides a–h peptides of marine origin studied by means of conceptual dft
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6163382/
https://www.ncbi.nlm.nih.gov/pubmed/30154377
http://dx.doi.org/10.3390/md16090302
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