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Future Directions of Marine Myxobacterial Natural Product Discovery Inferred from Metagenomics
Over the last two decades, halophilic (organisms that thrive at high salt concentrations) and halotolerant (organisms that have adapted to high salt concentrations) myxobacteria emerged as an important source of structurally diverse secondary metabolites from the marine environment. This review expl...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6163921/ https://www.ncbi.nlm.nih.gov/pubmed/30158489 http://dx.doi.org/10.3390/md16090303 |
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author | Garcia, Ronald La Clair, James J. Müller, Rolf |
author_facet | Garcia, Ronald La Clair, James J. Müller, Rolf |
author_sort | Garcia, Ronald |
collection | PubMed |
description | Over the last two decades, halophilic (organisms that thrive at high salt concentrations) and halotolerant (organisms that have adapted to high salt concentrations) myxobacteria emerged as an important source of structurally diverse secondary metabolites from the marine environment. This review explores the advance of metagenomics analysis and 16S rRNA gene phylogeny of the cultured and uncultured myxobacteria from marine and other salt-environments up to July 2018. The diversity of novel groups of myxobacteria in these environments appears unprecedented, especially in the Sorangiineae and Nannocystineae suborders. The Sandaracinaceae related clade in the Sorangiineae suborder seems more widely distributed compared to the exclusively marine myxobacterial cluster. Some of the previously identified clones from metagenomic studies were found to be related to the Nannocystineae suborder. This understanding provides the foundation for a vital, unexplored resource. Understanding the conditions required to cultivate these yet “uncultured” myxobacteria in the laboratory, while a key next step, offers a significant potential to further expand access to diverse secondary metabolites. |
format | Online Article Text |
id | pubmed-6163921 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-61639212018-10-11 Future Directions of Marine Myxobacterial Natural Product Discovery Inferred from Metagenomics Garcia, Ronald La Clair, James J. Müller, Rolf Mar Drugs Review Over the last two decades, halophilic (organisms that thrive at high salt concentrations) and halotolerant (organisms that have adapted to high salt concentrations) myxobacteria emerged as an important source of structurally diverse secondary metabolites from the marine environment. This review explores the advance of metagenomics analysis and 16S rRNA gene phylogeny of the cultured and uncultured myxobacteria from marine and other salt-environments up to July 2018. The diversity of novel groups of myxobacteria in these environments appears unprecedented, especially in the Sorangiineae and Nannocystineae suborders. The Sandaracinaceae related clade in the Sorangiineae suborder seems more widely distributed compared to the exclusively marine myxobacterial cluster. Some of the previously identified clones from metagenomic studies were found to be related to the Nannocystineae suborder. This understanding provides the foundation for a vital, unexplored resource. Understanding the conditions required to cultivate these yet “uncultured” myxobacteria in the laboratory, while a key next step, offers a significant potential to further expand access to diverse secondary metabolites. MDPI 2018-08-29 /pmc/articles/PMC6163921/ /pubmed/30158489 http://dx.doi.org/10.3390/md16090303 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Garcia, Ronald La Clair, James J. Müller, Rolf Future Directions of Marine Myxobacterial Natural Product Discovery Inferred from Metagenomics |
title | Future Directions of Marine Myxobacterial Natural Product Discovery Inferred from Metagenomics |
title_full | Future Directions of Marine Myxobacterial Natural Product Discovery Inferred from Metagenomics |
title_fullStr | Future Directions of Marine Myxobacterial Natural Product Discovery Inferred from Metagenomics |
title_full_unstemmed | Future Directions of Marine Myxobacterial Natural Product Discovery Inferred from Metagenomics |
title_short | Future Directions of Marine Myxobacterial Natural Product Discovery Inferred from Metagenomics |
title_sort | future directions of marine myxobacterial natural product discovery inferred from metagenomics |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6163921/ https://www.ncbi.nlm.nih.gov/pubmed/30158489 http://dx.doi.org/10.3390/md16090303 |
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