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Transcriptional Identification of Related Proteins in the Immune System of the Crayfish Procambarus clarkii
The freshwater crayfish Procambarus clarkii is an animal model employed for physiological and immunological studies and is also of great economic importance in aquaculture. Although it is a species of easy husbandry, a high percentage of its production is lost annually as a result of infectious dise...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6165390/ https://www.ncbi.nlm.nih.gov/pubmed/30213058 http://dx.doi.org/10.3390/ht7030026 |
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author | Calderón-Rosete, Gabina González-Barrios, Juan Antonio Lara-Lozano, Manuel Piña-Leyva, Celia Rodríguez-Sosa, Leonardo |
author_facet | Calderón-Rosete, Gabina González-Barrios, Juan Antonio Lara-Lozano, Manuel Piña-Leyva, Celia Rodríguez-Sosa, Leonardo |
author_sort | Calderón-Rosete, Gabina |
collection | PubMed |
description | The freshwater crayfish Procambarus clarkii is an animal model employed for physiological and immunological studies and is also of great economic importance in aquaculture. Although it is a species of easy husbandry, a high percentage of its production is lost annually as a result of infectious diseases. Currently, genetic information about the immune system of crustaceans is limited. Therefore, we used the abdominal nerve cord from P. clarkii to obtain its transcriptome using Next Generation Sequencing (NGS) to identify proteins that participate in the immune system. The reads were assembled de novo and consensus sequences with more than 3000 nucleotides were selected for analysis. The transcripts of the sequences of RNA were edited for annotation and sent to the GenBank database of the National Center for Biotechnology Information (NCBI). We made a list of accession numbers of the sequences which were organized by the putative role of the immune system pathway in which they participate. In this work, we report on 80 proteins identified from the transcriptome of crayfish related to the immune system, 74 of them being the first reported for P. clarkii. We hope that the knowledge of these sequences will contribute significantly to the development of future studies of the immune system in crustaceans. |
format | Online Article Text |
id | pubmed-6165390 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-61653902018-10-11 Transcriptional Identification of Related Proteins in the Immune System of the Crayfish Procambarus clarkii Calderón-Rosete, Gabina González-Barrios, Juan Antonio Lara-Lozano, Manuel Piña-Leyva, Celia Rodríguez-Sosa, Leonardo High Throughput Article The freshwater crayfish Procambarus clarkii is an animal model employed for physiological and immunological studies and is also of great economic importance in aquaculture. Although it is a species of easy husbandry, a high percentage of its production is lost annually as a result of infectious diseases. Currently, genetic information about the immune system of crustaceans is limited. Therefore, we used the abdominal nerve cord from P. clarkii to obtain its transcriptome using Next Generation Sequencing (NGS) to identify proteins that participate in the immune system. The reads were assembled de novo and consensus sequences with more than 3000 nucleotides were selected for analysis. The transcripts of the sequences of RNA were edited for annotation and sent to the GenBank database of the National Center for Biotechnology Information (NCBI). We made a list of accession numbers of the sequences which were organized by the putative role of the immune system pathway in which they participate. In this work, we report on 80 proteins identified from the transcriptome of crayfish related to the immune system, 74 of them being the first reported for P. clarkii. We hope that the knowledge of these sequences will contribute significantly to the development of future studies of the immune system in crustaceans. MDPI 2018-09-12 /pmc/articles/PMC6165390/ /pubmed/30213058 http://dx.doi.org/10.3390/ht7030026 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Calderón-Rosete, Gabina González-Barrios, Juan Antonio Lara-Lozano, Manuel Piña-Leyva, Celia Rodríguez-Sosa, Leonardo Transcriptional Identification of Related Proteins in the Immune System of the Crayfish Procambarus clarkii |
title | Transcriptional Identification of Related Proteins in the Immune System of the Crayfish Procambarus clarkii |
title_full | Transcriptional Identification of Related Proteins in the Immune System of the Crayfish Procambarus clarkii |
title_fullStr | Transcriptional Identification of Related Proteins in the Immune System of the Crayfish Procambarus clarkii |
title_full_unstemmed | Transcriptional Identification of Related Proteins in the Immune System of the Crayfish Procambarus clarkii |
title_short | Transcriptional Identification of Related Proteins in the Immune System of the Crayfish Procambarus clarkii |
title_sort | transcriptional identification of related proteins in the immune system of the crayfish procambarus clarkii |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6165390/ https://www.ncbi.nlm.nih.gov/pubmed/30213058 http://dx.doi.org/10.3390/ht7030026 |
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