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Transfer Learning for Soil Spectroscopy Based on Convolutional Neural Networks and Its Application in Soil Clay Content Mapping Using Hyperspectral Imagery

Soil spectra are often measured in the laboratory, and there is an increasing number of large-scale soil spectral libraries establishing across the world. However, calibration models developed from soil libraries are difficult to apply to spectral data acquired from the field or space. Transfer lear...

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Autores principales: Liu, Lanfa, Ji, Min, Buchroithner, Manfred
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6165490/
https://www.ncbi.nlm.nih.gov/pubmed/30235885
http://dx.doi.org/10.3390/s18093169
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author Liu, Lanfa
Ji, Min
Buchroithner, Manfred
author_facet Liu, Lanfa
Ji, Min
Buchroithner, Manfred
author_sort Liu, Lanfa
collection PubMed
description Soil spectra are often measured in the laboratory, and there is an increasing number of large-scale soil spectral libraries establishing across the world. However, calibration models developed from soil libraries are difficult to apply to spectral data acquired from the field or space. Transfer learning has the potential to bridge the gap and make the calibration model transferrable from one sensor to another. The objective of this study is to explore the potential of transfer learning for soil spectroscopy and its performance on soil clay content estimation using hyperspectral data. First, a one-dimensional convolutional neural network (1D-CNN) is used on Land Use/Land Cover Area Frame Survey (LUCAS) mineral soils. To evaluate whether the pre-trained 1D-CNN model was transferrable, LUCAS organic soils were used to fine-tune and validate the model. The fine-tuned model achieved a good accuracy (coefficient of determination (R(2)) = 0.756, root-mean-square error (RMSE) = 7.07 and ratio of percent deviation (RPD) = 2.26) for the estimation of clay content. Spectral index, as suggested as a simple transferrable feature, was also explored on LUCAS data, but did not performed well on the estimation of clay content. Then, the pre-trained 1D-CNN model was further fine-tuned by field samples collect in the study area with spectra extracted from HyMap imagery, achieved an accuracy of R(2) = 0.601, RMSE = 8.62 and RPD = 1.54. Finally, the soil clay map was generated with the fine-tuned 1D-CNN model and hyperspectral data.
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spelling pubmed-61654902018-10-10 Transfer Learning for Soil Spectroscopy Based on Convolutional Neural Networks and Its Application in Soil Clay Content Mapping Using Hyperspectral Imagery Liu, Lanfa Ji, Min Buchroithner, Manfred Sensors (Basel) Article Soil spectra are often measured in the laboratory, and there is an increasing number of large-scale soil spectral libraries establishing across the world. However, calibration models developed from soil libraries are difficult to apply to spectral data acquired from the field or space. Transfer learning has the potential to bridge the gap and make the calibration model transferrable from one sensor to another. The objective of this study is to explore the potential of transfer learning for soil spectroscopy and its performance on soil clay content estimation using hyperspectral data. First, a one-dimensional convolutional neural network (1D-CNN) is used on Land Use/Land Cover Area Frame Survey (LUCAS) mineral soils. To evaluate whether the pre-trained 1D-CNN model was transferrable, LUCAS organic soils were used to fine-tune and validate the model. The fine-tuned model achieved a good accuracy (coefficient of determination (R(2)) = 0.756, root-mean-square error (RMSE) = 7.07 and ratio of percent deviation (RPD) = 2.26) for the estimation of clay content. Spectral index, as suggested as a simple transferrable feature, was also explored on LUCAS data, but did not performed well on the estimation of clay content. Then, the pre-trained 1D-CNN model was further fine-tuned by field samples collect in the study area with spectra extracted from HyMap imagery, achieved an accuracy of R(2) = 0.601, RMSE = 8.62 and RPD = 1.54. Finally, the soil clay map was generated with the fine-tuned 1D-CNN model and hyperspectral data. MDPI 2018-09-19 /pmc/articles/PMC6165490/ /pubmed/30235885 http://dx.doi.org/10.3390/s18093169 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Lanfa
Ji, Min
Buchroithner, Manfred
Transfer Learning for Soil Spectroscopy Based on Convolutional Neural Networks and Its Application in Soil Clay Content Mapping Using Hyperspectral Imagery
title Transfer Learning for Soil Spectroscopy Based on Convolutional Neural Networks and Its Application in Soil Clay Content Mapping Using Hyperspectral Imagery
title_full Transfer Learning for Soil Spectroscopy Based on Convolutional Neural Networks and Its Application in Soil Clay Content Mapping Using Hyperspectral Imagery
title_fullStr Transfer Learning for Soil Spectroscopy Based on Convolutional Neural Networks and Its Application in Soil Clay Content Mapping Using Hyperspectral Imagery
title_full_unstemmed Transfer Learning for Soil Spectroscopy Based on Convolutional Neural Networks and Its Application in Soil Clay Content Mapping Using Hyperspectral Imagery
title_short Transfer Learning for Soil Spectroscopy Based on Convolutional Neural Networks and Its Application in Soil Clay Content Mapping Using Hyperspectral Imagery
title_sort transfer learning for soil spectroscopy based on convolutional neural networks and its application in soil clay content mapping using hyperspectral imagery
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6165490/
https://www.ncbi.nlm.nih.gov/pubmed/30235885
http://dx.doi.org/10.3390/s18093169
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