Cargando…

Transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm ‘Huabai 1’

Albinism in shoots of tea plants is a common phenotypic expression which gives the tea infusion a pleasant umami taste. A novel natural albino mutant tea germplasm containing high amino acids content was found and named as ‘Huabai 1’. ‘Huabai 1’ has white jade tender shoots under low temperature and...

Descripción completa

Detalles Bibliográficos
Autores principales: Ma, Qingping, Li, Huan, Zou, Zhongwei, Arkorful, Emmanuel, Lv, Qianru, Zhou, Qiongqiong, Chen, Xuan, Sun, Kang, Li, Xinghui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6165850/
https://www.ncbi.nlm.nih.gov/pubmed/30302258
http://dx.doi.org/10.1038/s41438-018-0053-y
_version_ 1783359916806766592
author Ma, Qingping
Li, Huan
Zou, Zhongwei
Arkorful, Emmanuel
Lv, Qianru
Zhou, Qiongqiong
Chen, Xuan
Sun, Kang
Li, Xinghui
author_facet Ma, Qingping
Li, Huan
Zou, Zhongwei
Arkorful, Emmanuel
Lv, Qianru
Zhou, Qiongqiong
Chen, Xuan
Sun, Kang
Li, Xinghui
author_sort Ma, Qingping
collection PubMed
description Albinism in shoots of tea plants is a common phenotypic expression which gives the tea infusion a pleasant umami taste. A novel natural albino mutant tea germplasm containing high amino acids content was found and named as ‘Huabai 1’. ‘Huabai 1’ has white jade tender shoots under low temperature and turns green with increased temperature. In order to understand the molecular mechanism of color change in leaf of ‘Huabai 1’, transcriptome analysis was performed to identify albino-associated differentially expressed genes (DEGs). A total of 483 DEGs were identified from white shoots of ‘Huabai 1’ compared to its green shoots. There were 15 DEGs identified to be involved in phenylpropanoid biosynthesis, which account for the majority of characterized DEGs. The metabolites related to phenylpropanoid biosynthesis revealed similar expression pattern of DEGs. Furthermore, metabolic pathways such as ubiquonone, tyrosine, and flavonoid biosynthesis associated with phenylpropanoid biosynthesis could also contribute to the color change in ‘Huabai 1’ tender shoots. Protein–protein interaction analysis revealed a hub protein NEDD8 (CSA009575) which interacted with many regulated genes in spliceosome, nitrogen metabolism, phenylpropanoid biosynthesis, and other pathways. In conclusion, the findings in this study indicate that the color change of ‘Huabai 1’ tender shoots is a combined effect of phenylpropanoid biosynthesis pathway and other metabolic pathways including flavonoid biosynthesis in tea plants. Chlorophyll biosynthesis-related genes LHCII and SGR may also play some roles in color change of ‘Huabai 1’.
format Online
Article
Text
id pubmed-6165850
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-61658502018-10-09 Transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm ‘Huabai 1’ Ma, Qingping Li, Huan Zou, Zhongwei Arkorful, Emmanuel Lv, Qianru Zhou, Qiongqiong Chen, Xuan Sun, Kang Li, Xinghui Hortic Res Article Albinism in shoots of tea plants is a common phenotypic expression which gives the tea infusion a pleasant umami taste. A novel natural albino mutant tea germplasm containing high amino acids content was found and named as ‘Huabai 1’. ‘Huabai 1’ has white jade tender shoots under low temperature and turns green with increased temperature. In order to understand the molecular mechanism of color change in leaf of ‘Huabai 1’, transcriptome analysis was performed to identify albino-associated differentially expressed genes (DEGs). A total of 483 DEGs were identified from white shoots of ‘Huabai 1’ compared to its green shoots. There were 15 DEGs identified to be involved in phenylpropanoid biosynthesis, which account for the majority of characterized DEGs. The metabolites related to phenylpropanoid biosynthesis revealed similar expression pattern of DEGs. Furthermore, metabolic pathways such as ubiquonone, tyrosine, and flavonoid biosynthesis associated with phenylpropanoid biosynthesis could also contribute to the color change in ‘Huabai 1’ tender shoots. Protein–protein interaction analysis revealed a hub protein NEDD8 (CSA009575) which interacted with many regulated genes in spliceosome, nitrogen metabolism, phenylpropanoid biosynthesis, and other pathways. In conclusion, the findings in this study indicate that the color change of ‘Huabai 1’ tender shoots is a combined effect of phenylpropanoid biosynthesis pathway and other metabolic pathways including flavonoid biosynthesis in tea plants. Chlorophyll biosynthesis-related genes LHCII and SGR may also play some roles in color change of ‘Huabai 1’. Nature Publishing Group UK 2018-10-01 /pmc/articles/PMC6165850/ /pubmed/30302258 http://dx.doi.org/10.1038/s41438-018-0053-y Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Ma, Qingping
Li, Huan
Zou, Zhongwei
Arkorful, Emmanuel
Lv, Qianru
Zhou, Qiongqiong
Chen, Xuan
Sun, Kang
Li, Xinghui
Transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm ‘Huabai 1’
title Transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm ‘Huabai 1’
title_full Transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm ‘Huabai 1’
title_fullStr Transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm ‘Huabai 1’
title_full_unstemmed Transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm ‘Huabai 1’
title_short Transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm ‘Huabai 1’
title_sort transcriptomic analyses identify albino-associated genes of a novel albino tea germplasm ‘huabai 1’
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6165850/
https://www.ncbi.nlm.nih.gov/pubmed/30302258
http://dx.doi.org/10.1038/s41438-018-0053-y
work_keys_str_mv AT maqingping transcriptomicanalysesidentifyalbinoassociatedgenesofanovelalbinoteagermplasmhuabai1
AT lihuan transcriptomicanalysesidentifyalbinoassociatedgenesofanovelalbinoteagermplasmhuabai1
AT zouzhongwei transcriptomicanalysesidentifyalbinoassociatedgenesofanovelalbinoteagermplasmhuabai1
AT arkorfulemmanuel transcriptomicanalysesidentifyalbinoassociatedgenesofanovelalbinoteagermplasmhuabai1
AT lvqianru transcriptomicanalysesidentifyalbinoassociatedgenesofanovelalbinoteagermplasmhuabai1
AT zhouqiongqiong transcriptomicanalysesidentifyalbinoassociatedgenesofanovelalbinoteagermplasmhuabai1
AT chenxuan transcriptomicanalysesidentifyalbinoassociatedgenesofanovelalbinoteagermplasmhuabai1
AT sunkang transcriptomicanalysesidentifyalbinoassociatedgenesofanovelalbinoteagermplasmhuabai1
AT lixinghui transcriptomicanalysesidentifyalbinoassociatedgenesofanovelalbinoteagermplasmhuabai1