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Complete genome sequence of the halophile bacterium Kushneria konosiri X49(T), isolated from salt-fermented Konosirus punctatus
Kushneria konosiri X49(T) is a member of the Halomonadaceae family within the order Oceanospirillales and can be isolated from salt-fermented larval gizzard shad. The genome of K. konosiri X49(T) reported here provides a genetic basis for its halophilic character. Diverse genes were involved in salt...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6167781/ https://www.ncbi.nlm.nih.gov/pubmed/30305867 http://dx.doi.org/10.1186/s40793-018-0324-0 |
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author | Yun, Ji-Hyun Sung, Hojun Kim, Hyun Sik Tak, Euon Jung Kang, Woorim Lee, June-Young Hyun, Dong-Wook Kim, Pil Soo Bae, Jin-Woo |
author_facet | Yun, Ji-Hyun Sung, Hojun Kim, Hyun Sik Tak, Euon Jung Kang, Woorim Lee, June-Young Hyun, Dong-Wook Kim, Pil Soo Bae, Jin-Woo |
author_sort | Yun, Ji-Hyun |
collection | PubMed |
description | Kushneria konosiri X49(T) is a member of the Halomonadaceae family within the order Oceanospirillales and can be isolated from salt-fermented larval gizzard shad. The genome of K. konosiri X49(T) reported here provides a genetic basis for its halophilic character. Diverse genes were involved in salt-in and -out strategies enabling adaptation of X49(T) to hypersaline environments. Due to resistance to high salt concentrations, genome research of K. konosiri X49(T) will contribute to the improvement of environmental and biotechnological usage by enhancing understanding of the osmotic equilibrium in the cytoplasm. Its genome consists of 3,584,631 bp, with an average G + C content of 59.1%, and 3261 coding sequences, 12 rRNAs, 66 tRNAs, and 8 miscRNAs. |
format | Online Article Text |
id | pubmed-6167781 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-61677812018-10-10 Complete genome sequence of the halophile bacterium Kushneria konosiri X49(T), isolated from salt-fermented Konosirus punctatus Yun, Ji-Hyun Sung, Hojun Kim, Hyun Sik Tak, Euon Jung Kang, Woorim Lee, June-Young Hyun, Dong-Wook Kim, Pil Soo Bae, Jin-Woo Stand Genomic Sci Short Genome Report Kushneria konosiri X49(T) is a member of the Halomonadaceae family within the order Oceanospirillales and can be isolated from salt-fermented larval gizzard shad. The genome of K. konosiri X49(T) reported here provides a genetic basis for its halophilic character. Diverse genes were involved in salt-in and -out strategies enabling adaptation of X49(T) to hypersaline environments. Due to resistance to high salt concentrations, genome research of K. konosiri X49(T) will contribute to the improvement of environmental and biotechnological usage by enhancing understanding of the osmotic equilibrium in the cytoplasm. Its genome consists of 3,584,631 bp, with an average G + C content of 59.1%, and 3261 coding sequences, 12 rRNAs, 66 tRNAs, and 8 miscRNAs. BioMed Central 2018-10-01 /pmc/articles/PMC6167781/ /pubmed/30305867 http://dx.doi.org/10.1186/s40793-018-0324-0 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Yun, Ji-Hyun Sung, Hojun Kim, Hyun Sik Tak, Euon Jung Kang, Woorim Lee, June-Young Hyun, Dong-Wook Kim, Pil Soo Bae, Jin-Woo Complete genome sequence of the halophile bacterium Kushneria konosiri X49(T), isolated from salt-fermented Konosirus punctatus |
title | Complete genome sequence of the halophile bacterium Kushneria konosiri X49(T), isolated from salt-fermented Konosirus punctatus |
title_full | Complete genome sequence of the halophile bacterium Kushneria konosiri X49(T), isolated from salt-fermented Konosirus punctatus |
title_fullStr | Complete genome sequence of the halophile bacterium Kushneria konosiri X49(T), isolated from salt-fermented Konosirus punctatus |
title_full_unstemmed | Complete genome sequence of the halophile bacterium Kushneria konosiri X49(T), isolated from salt-fermented Konosirus punctatus |
title_short | Complete genome sequence of the halophile bacterium Kushneria konosiri X49(T), isolated from salt-fermented Konosirus punctatus |
title_sort | complete genome sequence of the halophile bacterium kushneria konosiri x49(t), isolated from salt-fermented konosirus punctatus |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6167781/ https://www.ncbi.nlm.nih.gov/pubmed/30305867 http://dx.doi.org/10.1186/s40793-018-0324-0 |
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