Cargando…

MITE Tracker: an accurate approach to identify miniature inverted-repeat transposable elements in large genomes

BACKGROUND: Miniature inverted-repeat transposable elements (MITEs) are short, non-autonomous class II transposable elements present in a high number of conserved copies in eukaryote genomes. An accurate identification of these elements can help to shed light on the mechanisms controlling genome evo...

Descripción completa

Detalles Bibliográficos
Autores principales:	Crescente, Juan Manuel, Zavallo, Diego, Helguera, Marcelo, Vanzetti, Leonardo Sebastián
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2018
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6171319/ https://www.ncbi.nlm.nih.gov/pubmed/30285604 http://dx.doi.org/10.1186/s12859-018-2376-y

Ejemplares similares

Genome-wide identification of MITE-derived microRNAs and their targets in bread wheat
por: Crescente, Juan M., et al.
Publicado: (2022)

MITE Digger, an efficient and accurate algorithm for genome wide discovery of miniature inverted repeat transposable elements
por: Yang, Guojun
Publicado: (2013)

P-MITE: a database for plant miniature inverted-repeat transposable elements
por: Chen, Jiongjiong, et al.
Publicado: (2014)

detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes
por: Ye, Congting, et al.
Publicado: (2016)

Multigenome analysis implicates miniature inverted-repeat transposable elements (MITEs) in metabolic diversification in eudicots
por: Boutanaev, Alexander M., et al.
Publicado: (2018)

Identification and Characterisation of five novel Miniature Inverted-repeat Transposable Elements (MITEs) in amphioxus (Branchiostoma floridae)
por: Osborne, PW., et al.
Publicado: (2006)

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
por: Han, Yujun, et al.
Publicado: (2010)

Miniature Inverted-Repeat Transposable Elements (MITEs) in the Two Lepidopteran Genomes of Helicoverpa armigera and Helicoverpa zea
por: Klai, Khouloud, et al.
Publicado: (2022)

Plant Lineage-Specific Amplification of Transcription Factor Binding Motifs by Miniature Inverted-Repeat Transposable Elements (MITEs)
por: Morata, Jordi, et al.
Publicado: (2018)

Comparative analysis of miniature inverted–repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons in six Citrus species
por: Liu, Yan, et al.
Publicado: (2019)

Characterization of active miniature inverted-repeat transposable elements in the peanut genome
por: Shirasawa, Kenta, et al.
Publicado: (2012)

Unexpected invasion of miniature inverted-repeat transposable elements in viral genomes
por: Zhang, Hua-Hao, et al.
Publicado: (2018)

Identification of novel MITEs (miniature inverted-repeat transposable elements) in Coxiella burnetii: implications for protein and small RNA evolution
por: Wachter, Shaun, et al.
Publicado: (2018)

MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs)
por: Ge, Ruiquan, et al.
Publicado: (2017)

MiteFinderII: a novel tool to identify miniature inverted-repeat transposable elements hidden in eukaryotic genomes
por: Hu, Jialu, et al.
Publicado: (2018)

Identification and characterization of a minisatellite contained within a novel miniature inverted-repeat transposable element (MITE) of Porphyromonas gingivalis
por: Klein, Brian A., et al.
Publicado: (2015)

Identification of an active miniature inverted‐repeat transposable element mJing in rice
por: Tang, Yanyan, et al.
Publicado: (2019)

A Global Landscape of Miniature Inverted-Repeat Transposable Elements in the Carrot Genome
por: Macko-Podgórni, Alicja, et al.
Publicado: (2021)

A miniature inverted-repeat transposable element, AddIn-MITE, located inside a WD40 gene is conserved in Andropogoneae grasses
por: Grativol, Clicia, et al.
Publicado: (2019)

iMITEdb: the genome-wide landscape of miniature inverted-repeat transposable elements in insects
por: Han, Min-Jin, et al.
Publicado: (2016)

Translational repression by a miniature inverted-repeat transposable element in the 3′ untranslated region
por: Shen, Jianqiang, et al.
Publicado: (2017)

Recent amplification of microsatellite-associated miniature inverted-repeat transposable elements in the pineapple genome
por: Lin, Lianyu, et al.
Publicado: (2021)

Miniature Inverted-repeat Transposable Elements Drive Rapid MicroRNA Diversification in Angiosperms
por: Guo, Zhonglong, et al.
Publicado: (2022)

A Family of Human MicroRNA Genes from Miniature Inverted-Repeat Transposable Elements
por: Piriyapongsa, Jittima, et al.
Publicado: (2007)

Abundant Degenerate Miniature Inverted-Repeat Transposable Elements in Genomes of Epichloid Fungal Endophytes of Grasses
por: Fleetwood, Damien J., et al.
Publicado: (2011)

The Origin and Evolution of Six Miniature Inverted-Repeat Transposable Elements in Bombyx mori and Rhodnius prolixus
por: Zhang, Hua-Hao, et al.
Publicado: (2013)

Temporal changes in transcripts of miniature inverted‐repeat transposable elements during rice endosperm development
por: Nagata, Hiroki, et al.
Publicado: (2022)

Miniature inverted-repeat transposable elements (MITEs) in rice were originated and amplified predominantly after the divergence of Oryza and Brachypodium and contributed considerable diversity to the species
por: Chen, Jiongjiong, et al.
Publicado: (2012)

A Gaijin-like miniature inverted repeat transposable element is mobilized in rice during cell differentiation
por: Dong, Hai-Tao, et al.
Publicado: (2012)

The Complex Genetic Context of bla (PER-1) Flanked by Miniature Inverted-Repeat Transposable Elements in Acinetobacter johnsonii
por: Zong, Zhiyong
Publicado: (2014)

Genome-Wide Comparative Analysis of Miniature Inverted Repeat Transposable Elements in 19 Arabidopsis thaliana Ecotype Accessions
por: Guo, Cheng, et al.
Publicado: (2017)

Miniature Inverted-Repeat Transposable Elements: Small DNA Transposons That Have Contributed to Plant MICRORNA Gene Evolution
por: Pegler, Joseph L., et al.
Publicado: (2023)

Miniature Inverted–Repeat Transposable Elements (MITEs) Have Been Accumulated through Amplification Bursts and Play Important Roles in Gene Expression and Species Diversity in Oryza sativa
por: Lu, Chen, et al.
Publicado: (2012)

MITE(Aba12), a Novel Mobile Miniature Inverted-Repeat Transposable Element Identified in Acinetobacter baumannii ATCC 17978 and Its Prevalence across the Moraxellaceae Family
por: Adams, Felise G., et al.
Publicado: (2019)

Genome-Wide Comparative Analysis of 20 Miniature Inverted-Repeat Transposable Element Families in Brassica rapa and B. oleracea
por: Sampath, Perumal, et al.
Publicado: (2014)

Amplification of miniature inverted-repeat transposable elements and the associated impact on gene regulation and alternative splicing in mulberry (Morus notabilis)
por: Xin, Youchao, et al.
Publicado: (2019)

Genome-wide analyses of miniature inverted-repeat transposable elements reveals new insights into the evolution of the Triticum-Aegilops group
por: Keidar-Friedman, Danielle, et al.
Publicado: (2018)

Stowaway miniature inverted repeat transposable elements are important agents driving recent genomic diversity in wild and cultivated carrot
por: Macko-Podgórni, Alicja, et al.
Publicado: (2019)

Correction: Genome-Wide Comparative Analysis of 20 Miniature Inverted-Repeat Transposable Element Families in Brassica rapa and B. oleracea
Publicado: (2014)

Miniature Inverted Repeat Transposable Element Insertions Provide a Source of Intron Length Polymorphism Markers in the Carrot (Daucus carota L.)
por: Stelmach, Katarzyna, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_e7bd5j5gt8qot3tlgk35n2b6ib