Cargando…

tRNA epitranscriptomics and biased codon are linked to proteome expression in Plasmodium falciparum

Among components of the translational machinery, ribonucleoside modifications on tRNAs are emerging as critical regulators of cell physiology and stress response. Here, we demonstrate highly coordinated behavior of the repertoire of tRNA modifications of Plasmodium falciparum throughout the intra‐er...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ng, Chee Sheng, Sinha, Ameya, Aniweh, Yaw, Nah, Qianhui, Babu, Indrakanti Ramesh, Gu, Chen, Chionh, Yok Hian, Dedon, Peter C, Preiser, Peter R
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley and Sons Inc. 2018
Materias:	Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6171970/ https://www.ncbi.nlm.nih.gov/pubmed/30287681 http://dx.doi.org/10.15252/msb.20178009

Ejemplares similares

tRNA-mediated codon-biased translation in mycobacterial hypoxic persistence
por: Chionh, Yok Hian, et al.
Publicado: (2016)

Lifestyle modifications: coordinating the tRNA epitranscriptome with codon bias to adapt translation during stress responses
por: Chan, Cheryl, et al.
Publicado: (2018)

Reciprocal regulation of TORC signaling and tRNA modifications by Elongator enforces nutrient-dependent cell fate
por: Candiracci, Julie, et al.
Publicado: (2019)

The Versatile Roles of the tRNA Epitranscriptome during Cellular Responses to Toxic Exposures and Environmental Stress
por: Huber, Sabrina M., et al.
Publicado: (2019)

Dengue virus exploits the host tRNA epitranscriptome to promote viral replication
por: Chan, Cheryl, et al.
Publicado: (2023)

Trm9-Catalyzed tRNA Modifications Regulate Global Protein Expression by Codon-Biased Translation
por: Deng, Wenjun, et al.
Publicado: (2015)

Thienopyrimidinone Derivatives That Inhibit Bacterial tRNA (Guanine37-N(1))-Methyltransferase (TrmD) by Restructuring the Active Site with a Tyrosine-Flipping Mechanism
por: Zhong, Wenhe, et al.
Publicado: (2019)

Crystal structure and catalytic mechanism of the essential m(1)G37 tRNA methyltransferase TrmD from Pseudomonas aeruginosa
por: Jaroensuk, Juthamas, et al.
Publicado: (2019)

Highly Predictive Reprogramming of tRNA Modifications Is Linked to Selective Expression of Codon-Biased Genes
por: Chan, Clement T. Y., et al.
Publicado: (2015)

Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins
por: Chan, Clement T.Y., et al.
Publicado: (2012)

CHIKV infection reprograms codon optimality to favor viral RNA translation by altering the tRNA epitranscriptome
por: Jungfleisch, Jennifer, et al.
Publicado: (2022)

Identification of N(6),N(6)-Dimethyladenosine in Transfer RNA from Mycobacterium bovis Bacille Calmette-Guérin
por: Chan, Clement T.Y., et al.
Publicado: (2011)

Arsenite toxicity is regulated by queuine availability and oxidation-induced reprogramming of the human tRNA epitranscriptome
por: Huber, Sabrina M., et al.
Publicado: (2022)

Methylation at position 32 of tRNA catalyzed by TrmJ alters oxidative stress response in Pseudomonas aeruginosa
por: Jaroensuk, Juthamas, et al.
Publicado: (2016)

Mycobacterial RNA isolation optimized for non-coding RNA: high fidelity isolation of 5S rRNA from Mycobacterium bovis BCG reveals novel post-transcriptional processing and a complete spectrum of modified ribonucleosides
por: Hia, Fabian, et al.
Publicado: (2015)

A multidimensional platform for the purification of non-coding RNA species
por: Chionh, Yok Hian, et al.
Publicado: (2013)

Malaria Parasite Stress Tolerance Is Regulated by DNMT2-Mediated tRNA Cytosine Methylation
por: Hammam, Elie, et al.
Publicado: (2021)

The role of sequence context, nucleotide pool balance and stress in 2′-deoxynucleotide misincorporation in viral, bacterial and mammalian RNA
por: Wang, Jin, et al.
Publicado: (2016)

Towards ultrasensitive malaria diagnosis using surface enhanced Raman spectroscopy
por: Chen, Keren, et al.
Publicado: (2016)

Corrigendum: Towards ultrasensitive malaria diagnosis using surface enhanced Raman spectroscopy
por: Chen, Keren, et al.
Publicado: (2017)

Plasmodium falciparum strains spontaneously switch invasion phenotype in suspension culture
por: Awandare, Gordon A., et al.
Publicado: (2018)

Short-term cryopreservation and thawing have minimal effects on Plasmodium falciparum ex vivo invasion profile
por: Thiam, Laty G., et al.
Publicado: (2022)

Antimalarial activity of Malaria Box Compounds against Plasmodium falciparum clinical isolates
por: Chirawurah, Jersley D., et al.
Publicado: (2017)

Non-Redundant tRNA Reference Sequences for Deep Sequencing Analysis of tRNA Abundance and Epitranscriptomic RNA Modifications
por: PICHOT, Florian, et al.
Publicado: (2021)

Epigenetic and Epitranscriptomic Gene Regulation in Plasmodium falciparum and How We Can Use It against Malaria
por: Serrano-Durán, Rafael, et al.
Publicado: (2022)

Production of Superoxide in Bacteria Is Stress- and Cell State-Dependent: A Gating-Optimized Flow Cytometry Method that Minimizes ROS Measurement Artifacts with Fluorescent Dyes
por: McBee, Megan E., et al.
Publicado: (2017)

Investigating a Plasmodium falciparum erythrocyte invasion phenotype switch at the whole transcriptome level
por: Nyarko, Prince B., et al.
Publicado: (2020)

2′-O Methylation of Internal Adenosine by Flavivirus NS5 Methyltransferase
por: Dong, Hongping, et al.
Publicado: (2012)

Allosteric pyruvate kinase-based “logic gate” synergistically senses energy and sugar levels in Mycobacterium tuberculosis
por: Zhong, Wenhe, et al.
Publicado: (2017)

Diverse cell stresses induce unique patterns of tRNA up- and down-regulation: tRNA-seq for quantifying changes in tRNA copy number
por: Pang, Yan Ling Joy, et al.
Publicado: (2014)

Modelling the Efficiency of Codon–tRNA Interactions Based on Codon Usage Bias
por: Sabi, Renana, et al.
Publicado: (2014)

Strategies to Avoid Artifacts in Mass Spectrometry‐Based Epitranscriptome Analyses
por: Kaiser, Steffen, et al.
Publicado: (2021)

Co-infection of Plasmodium falciparum and Schistosoma mansoni is associated with anaemia
por: Dassah, Sylvester Donne, et al.
Publicado: (2023)

Exploring the virulence gene interactome with CRISPR/dCas9 in the human malaria parasite
por: Bryant, Jessica M, et al.
Publicado: (2020)

Discovery of a new predominant cytosine DNA modification that is linked to gene expression in malaria parasites
por: Hammam, Elie, et al.
Publicado: (2020)

tModBase: deciphering the landscape of tRNA modifications and their dynamic changes from epitranscriptome data
por: Lei, Hao-Tian, et al.
Publicado: (2022)

Cracking the epitranscriptome
por: Schwartz, Schraga
Publicado: (2016)

Translating the epitranscriptome
por: Hoernes, Thomas Philipp, et al.
Publicado: (2016)

Epitranscriptomics of cancer
por: Tusup, Marina, et al.
Publicado: (2018)

A System of RNA Modifications and Biased Codon Use Controls Cellular Stress Response at the Level of Translation
por: Dedon, Peter C., et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_5ngf7mch10tnfgl4u4oto3k7cu