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Altered editing level of microRNAs is a potential biomarker in lung adenocarcinoma

Adenosine‐to‐inosine (A‐to‐I) microRNA editing is associated with tumor phenotypes in various cancer types. Recent analyses of The Cancer Genome Atlas (TCGA) dataset have shown several microRNAs that undergo A‐to‐I editing in human cancers, some of which have been reported to be associated with prog...

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Autores principales: Maemura, Keita, Watanabe, Kousuke, Ando, Takahiro, Hiyama, Noriko, Sakatani, Toshio, Amano, Yosuke, Kage, Hidenori, Nakajima, Jun, Yatomi, Yutaka, Nagase, Takahide, Takai, Daiya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6172074/
https://www.ncbi.nlm.nih.gov/pubmed/30022565
http://dx.doi.org/10.1111/cas.13742
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author Maemura, Keita
Watanabe, Kousuke
Ando, Takahiro
Hiyama, Noriko
Sakatani, Toshio
Amano, Yosuke
Kage, Hidenori
Nakajima, Jun
Yatomi, Yutaka
Nagase, Takahide
Takai, Daiya
author_facet Maemura, Keita
Watanabe, Kousuke
Ando, Takahiro
Hiyama, Noriko
Sakatani, Toshio
Amano, Yosuke
Kage, Hidenori
Nakajima, Jun
Yatomi, Yutaka
Nagase, Takahide
Takai, Daiya
author_sort Maemura, Keita
collection PubMed
description Adenosine‐to‐inosine (A‐to‐I) microRNA editing is associated with tumor phenotypes in various cancer types. Recent analyses of The Cancer Genome Atlas (TCGA) dataset have shown several microRNAs that undergo A‐to‐I editing in human cancers, some of which have been reported to be associated with prognosis. Herein, we examined published small RNA deep sequencing data of 74 cases of lung adenocarcinoma (AD) and the corresponding normal counterpart (NC) specimen in silico in order to identify A‐to‐I microRNA editing events. Editing levels of miR‐379‐5p, miR‐99a‐5p, and miR‐497‐5p were lower in AD than in NC and, in a large number of cases, the editing level of miR‐200b‐3p was higher in AD than in NC. Difference in the editing level between AD and NC was largest for miR‐99a‐5p. Then, we examined the editing level of miR‐99a‐5p in 50 surgically resected lung adenocarcinoma cases at our institution by a conventional sequence‐based method, and its association with clinical outcomes. The editing level of miR‐99a‐5p was significantly lower in 19 cases of AD (38%) than in corresponding NC. These cases showed a shorter overall survival as assessed using the log‐rank test (P = .047). This trend was consistent with previous analyses of TCGA dataset. The altered editing level of microRNAs in lung adenocarcinoma could serve as a potential biomarker.
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spelling pubmed-61720742018-10-10 Altered editing level of microRNAs is a potential biomarker in lung adenocarcinoma Maemura, Keita Watanabe, Kousuke Ando, Takahiro Hiyama, Noriko Sakatani, Toshio Amano, Yosuke Kage, Hidenori Nakajima, Jun Yatomi, Yutaka Nagase, Takahide Takai, Daiya Cancer Sci Original Articles Adenosine‐to‐inosine (A‐to‐I) microRNA editing is associated with tumor phenotypes in various cancer types. Recent analyses of The Cancer Genome Atlas (TCGA) dataset have shown several microRNAs that undergo A‐to‐I editing in human cancers, some of which have been reported to be associated with prognosis. Herein, we examined published small RNA deep sequencing data of 74 cases of lung adenocarcinoma (AD) and the corresponding normal counterpart (NC) specimen in silico in order to identify A‐to‐I microRNA editing events. Editing levels of miR‐379‐5p, miR‐99a‐5p, and miR‐497‐5p were lower in AD than in NC and, in a large number of cases, the editing level of miR‐200b‐3p was higher in AD than in NC. Difference in the editing level between AD and NC was largest for miR‐99a‐5p. Then, we examined the editing level of miR‐99a‐5p in 50 surgically resected lung adenocarcinoma cases at our institution by a conventional sequence‐based method, and its association with clinical outcomes. The editing level of miR‐99a‐5p was significantly lower in 19 cases of AD (38%) than in corresponding NC. These cases showed a shorter overall survival as assessed using the log‐rank test (P = .047). This trend was consistent with previous analyses of TCGA dataset. The altered editing level of microRNAs in lung adenocarcinoma could serve as a potential biomarker. John Wiley and Sons Inc. 2018-09-06 2018-10 /pmc/articles/PMC6172074/ /pubmed/30022565 http://dx.doi.org/10.1111/cas.13742 Text en © 2018 The Authors. Cancer Science published by John Wiley & Sons Australia, Ltd on behalf of Japanese Cancer Association. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Original Articles
Maemura, Keita
Watanabe, Kousuke
Ando, Takahiro
Hiyama, Noriko
Sakatani, Toshio
Amano, Yosuke
Kage, Hidenori
Nakajima, Jun
Yatomi, Yutaka
Nagase, Takahide
Takai, Daiya
Altered editing level of microRNAs is a potential biomarker in lung adenocarcinoma
title Altered editing level of microRNAs is a potential biomarker in lung adenocarcinoma
title_full Altered editing level of microRNAs is a potential biomarker in lung adenocarcinoma
title_fullStr Altered editing level of microRNAs is a potential biomarker in lung adenocarcinoma
title_full_unstemmed Altered editing level of microRNAs is a potential biomarker in lung adenocarcinoma
title_short Altered editing level of microRNAs is a potential biomarker in lung adenocarcinoma
title_sort altered editing level of micrornas is a potential biomarker in lung adenocarcinoma
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6172074/
https://www.ncbi.nlm.nih.gov/pubmed/30022565
http://dx.doi.org/10.1111/cas.13742
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