Cargando…

Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species

The African wild rice species Oryza longistaminata has several beneficial traits compared to cultivated rice species, such as resistance to biotic stresses, clonal propagation via rhizomes, and increased biomass production. To facilitate breeding efforts and functional genomics studies, we de-novo a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Reuscher, Stefan, Furuta, Tomoyuki, Bessho-Uehara, Kanako, Cosi, Michele, Jena, Kshirod K., Toyoda, Atsushi, Fujiyama, Asao, Kurata, Nori, Ashikari, Motoyuki
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2018
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6173730/ https://www.ncbi.nlm.nih.gov/pubmed/30320230 http://dx.doi.org/10.1038/s42003-018-0171-y

Ejemplares similares

Sucrose affects the developmental transition of rhizomes in Oryza longistaminata
por: Bessho-Uehara, Kanako, et al.
Publicado: (2018)

Correction to: Sucrose affects the developmental transition of rhizomes in Oryza longistaminata
por: Bessho‑Uehara, Kanako, et al.
Publicado: (2019)

Can the Wild Perennial, Rhizomatous Rice Species Oryza longistaminata be a Candidate for De Novo Domestication?
por: Tong, Shuai, et al.
Publicado: (2023)

Development and evaluation of chromosome segment substitution lines (CSSLs) carrying chromosome segments derived from Oryza rufipogon in the genetic background of Oryza sativa L.
por: Furuta, Tomoyuki, et al.
Publicado: (2014)

Construction of rice chromosome segment substitution lines harboring Oryza barthii genome and evaluation of yield-related traits
por: Bessho-Uehara, Kanako, et al.
Publicado: (2017)

Adapting Genotyping-by-Sequencing for Rice F2 Populations
por: Furuta, Tomoyuki, et al.
Publicado: (2017)

OryzaGenome: Genome Diversity Database of Wild Oryza Species
por: Ohyanagi, Hajime, et al.
Publicado: (2016)

Development of chromosome segment substitution lines harboring Oryza nivara genomic segments in Koshihikari and evaluation of yield-related traits
por: Furuta, Tomoyuki, et al.
Publicado: (2016)

Confirmation of a Gametophytic Self-Incompatibility in Oryza longistaminata
por: Lian, Xiaoping, et al.
Publicado: (2021)

Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci
por: Furuta, Tomoyuki, et al.
Publicado: (2015)

A Genetic Network Underlying Rhizome Development in Oryza longistaminata
por: Li, Wenfei, et al.
Publicado: (2022)

Sucrose Facilitates Rhizome Development of Perennial Rice (Oryza longistaminata)
por: Fan, Zhiquan, et al.
Publicado: (2022)

Deciphering the Genetic Basis of Lodging Resistance in Wild Rice Oryza longistaminata
por: Long, Weixiong, et al.
Publicado: (2020)

Favorable QTLs from Oryza longistaminata improve rice drought resistance
por: Huang, Shaoying, et al.
Publicado: (2022)

OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species
por: Kajiya-Kanegae, Hiromi, et al.
Publicado: (2021)

Quantitative Trait Locus Mapping of Salt Tolerance in Wild Rice Oryza longistaminata
por: Yuan, Lei, et al.
Publicado: (2022)

QTL Mapping of a Novel Genomic Region Associated with High Out-Crossing Rate Derived from Oryza longistaminata and Development of New CMS Lines in Rice, O. sativa L.
por: Prahalada, G. D., et al.
Publicado: (2021)

Identification of rhizome-specific genes by genome-wide differential expression Analysis in Oryza longistaminata
por: Hu, Fengyi, et al.
Publicado: (2011)

Identification of Anther Length QTL and Construction of Chromosome Segment Substitution Lines of Oryza longistaminata
por: Ogami, Takayuki, et al.
Publicado: (2019)

Quantitative Proteomics and Transcriptomics Reveals Differences in Proteins During Anthers Development in Oryza longistaminata
por: Sun, Yue, et al.
Publicado: (2021)

Regulation of ammonium acquisition and use in Oryza longistaminata ramets under nitrogen source heterogeneity
por: Kawai, Misato, et al.
Publicado: (2022)

Global characterization of the root transcriptome of a wild species of rice, Oryza longistaminata, by deep sequencing
por: Yang, Haiyuan, et al.
Publicado: (2010)

PCR-based INDEL markers co-dominant between Oryza sativa, japonica cultivars and closely-related wild Oryza species
por: Niihama, Mitsuru, et al.
Publicado: (2015)

Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata)
por: Xie, Jian, et al.
Publicado: (2021)

Fine mapping of Pi57(t) conferring broad spectrum resistance against Magnaporthe oryzae in introgression line IL-E1454 derived from Oryza longistaminata
por: Dong, Liying, et al.
Publicado: (2017)

Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
por: Kim, Sung-Ryul, et al.
Publicado: (2016)

Differential transcriptome profiling of chilling stress response between shoots and rhizomes of Oryza longistaminata using RNA sequencing
por: Zhang, Ting, et al.
Publicado: (2017)

QTL Mapping of Seed Vigor of Backcross Inbred Lines Derived From Oryza longistaminata Under Artificial Aging
por: Jin, Jie, et al.
Publicado: (2018)

Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels
por: Shenton, Matt, et al.
Publicado: (2020)

Comparison of wild rice (Oryza longistaminata) tissues identifies rhizome-specific bacterial and archaeal endophytic microbiomes communities and network structures
por: Peng, Xiaojue, et al.
Publicado: (2021)

Draft genomes of two outcrossing wild rice, Oryza rufipogon and O. longistaminata, reveal genomic features associated with mating‐system evolution
por: Li, Wei, et al.
Publicado: (2020)

Quantitative Trait Loci Mapping of Mineral Element Contents in Brown Rice Using Backcross Inbred Lines Derived From Oryza longistaminata
por: Liu, Xingdan, et al.
Publicado: (2020)

Comparative analysis morphology, anatomical structure and transcriptional regulatory network of chlorophyll biosynthesis in Oryza longistaminata, O. sativa and their F(1) generation
por: Hu, Zhihang, et al.
Publicado: (2021)

Nitrogen Nutrition Promotes Rhizome Bud Outgrowth via Regulation of Cytokinin Biosynthesis Genes and an Oryza longistaminata Ortholog of FINE CULM 1
por: Shibasaki, Kyohei, et al.
Publicado: (2021)

Genetic Variation of Blast (Pyricularia oryzae Cavara) Resistance in the Longistaminata Chromosome Segment Introgression Lines (LCSILs) and Potential for Breeding Use in Kenya
por: Tomita, Rena, et al.
Publicado: (2023)

Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation
por: Kitazumi, Ai, et al.
Publicado: (2018)

Association between QTLs and morphological traits toward sheath blight resistance in rice (Oryza sativa L.)
por: Hossain, Md Kamal, et al.
Publicado: (2016)

The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae
por: Thon, Michael R, et al.
Publicado: (2006)

A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement
por: He, Ruifeng, et al.
Publicado: (2014)

Development of an intergeneric hybrid between Oryza sativa L. and Leersia perrieri (A. Camus) Launert
por: Ballesfin, Ma. LaRue E., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_1omfhj2gd0o5o4b0341cq7v4l0