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Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools

Twinning is a crystal growth anomaly, which has posed a challenge in macromolecular crystallography (MX) since the earliest days. Many approaches have been used to treat twinned data in order to extract structural information. However, in most cases it is usually simpler to rescreen for new crystall...

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Autores principales: Campeotto, Ivan, Lebedev, Andrey, Schreurs, Antoine M. M., Kroon-Batenburg, Loes M. J., Lowe, Edward, Phillips, Simon E. V., Murshudov, Garib N., Pearson, Arwen R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6173773/
https://www.ncbi.nlm.nih.gov/pubmed/30291262
http://dx.doi.org/10.1038/s41598-018-32962-6
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author Campeotto, Ivan
Lebedev, Andrey
Schreurs, Antoine M. M.
Kroon-Batenburg, Loes M. J.
Lowe, Edward
Phillips, Simon E. V.
Murshudov, Garib N.
Pearson, Arwen R.
author_facet Campeotto, Ivan
Lebedev, Andrey
Schreurs, Antoine M. M.
Kroon-Batenburg, Loes M. J.
Lowe, Edward
Phillips, Simon E. V.
Murshudov, Garib N.
Pearson, Arwen R.
author_sort Campeotto, Ivan
collection PubMed
description Twinning is a crystal growth anomaly, which has posed a challenge in macromolecular crystallography (MX) since the earliest days. Many approaches have been used to treat twinned data in order to extract structural information. However, in most cases it is usually simpler to rescreen for new crystallization conditions that yield an untwinned crystal form or, if possible, collect data from non-twinned parts of the crystal. Here, we report 11 structures of engineered variants of the E. coli enzyme N-acetyl-neuraminic lyase which, despite twinning and incommensurate modulation, have been successfully indexed, solved and deposited. These structures span a resolution range of 1.45–2.30 Å, which is unusually high for datasets presenting such lattice disorders in MX and therefore these data provide an excellent test set for improving and challenging MX data processing programs.
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spelling pubmed-61737732018-10-09 Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools Campeotto, Ivan Lebedev, Andrey Schreurs, Antoine M. M. Kroon-Batenburg, Loes M. J. Lowe, Edward Phillips, Simon E. V. Murshudov, Garib N. Pearson, Arwen R. Sci Rep Article Twinning is a crystal growth anomaly, which has posed a challenge in macromolecular crystallography (MX) since the earliest days. Many approaches have been used to treat twinned data in order to extract structural information. However, in most cases it is usually simpler to rescreen for new crystallization conditions that yield an untwinned crystal form or, if possible, collect data from non-twinned parts of the crystal. Here, we report 11 structures of engineered variants of the E. coli enzyme N-acetyl-neuraminic lyase which, despite twinning and incommensurate modulation, have been successfully indexed, solved and deposited. These structures span a resolution range of 1.45–2.30 Å, which is unusually high for datasets presenting such lattice disorders in MX and therefore these data provide an excellent test set for improving and challenging MX data processing programs. Nature Publishing Group UK 2018-10-05 /pmc/articles/PMC6173773/ /pubmed/30291262 http://dx.doi.org/10.1038/s41598-018-32962-6 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Campeotto, Ivan
Lebedev, Andrey
Schreurs, Antoine M. M.
Kroon-Batenburg, Loes M. J.
Lowe, Edward
Phillips, Simon E. V.
Murshudov, Garib N.
Pearson, Arwen R.
Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools
title Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools
title_full Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools
title_fullStr Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools
title_full_unstemmed Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools
title_short Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools
title_sort pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6173773/
https://www.ncbi.nlm.nih.gov/pubmed/30291262
http://dx.doi.org/10.1038/s41598-018-32962-6
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