A de novo transcriptome assembly of the zebra bullhead shark, Heterodontus zebra

Although cartilaginous fishes have played crucial roles in various fields, including evolutionary biology, marine ecology, bioresources, and aquarium exhibitions, molecular information for these species is poorly available. The present study reports a transcriptome assembly from an embryo of the zeb...

Descripción completa

Detalles Bibliográficos
Autores principales: Onimaru, Koh, Tatsumi, Kaori, Shibagaki, Kazuhiro, Kuraku, Shigehiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2018
Materias:
Data Descriptor
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6174923/
https://www.ncbi.nlm.nih.gov/pubmed/30295671
http://dx.doi.org/10.1038/sdata.2018.197
_version_ 1783361388338479104
author Onimaru, Koh
Tatsumi, Kaori
Shibagaki, Kazuhiro
Kuraku, Shigehiro
author_facet Onimaru, Koh
Tatsumi, Kaori
Shibagaki, Kazuhiro
Kuraku, Shigehiro
author_sort Onimaru, Koh
collection PubMed
description Although cartilaginous fishes have played crucial roles in various fields, including evolutionary biology, marine ecology, bioresources, and aquarium exhibitions, molecular information for these species is poorly available. The present study reports a transcriptome assembly from an embryo of the zebra bullhead shark (Heterodontus zebra), produced by paired-end RNA sequencing. Transcriptome data is generated with a de novo transcriptome assembler, Trinity. Amino acid sequences are predicted from the assemblies, using TransDecoder. Because cartilaginous fishes serve as the outgroup of bony vertebrates, the data would contribute to comparative analyses of a various biological fields. In addition, this study would be useful for conservation biology, such as transcriptome-based population genetics.
format Online
Article
Text
id pubmed-6174923
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-61749232018-10-12 A de novo transcriptome assembly of the zebra bullhead shark, Heterodontus zebra Onimaru, Koh Tatsumi, Kaori Shibagaki, Kazuhiro Kuraku, Shigehiro Sci Data Data Descriptor Although cartilaginous fishes have played crucial roles in various fields, including evolutionary biology, marine ecology, bioresources, and aquarium exhibitions, molecular information for these species is poorly available. The present study reports a transcriptome assembly from an embryo of the zebra bullhead shark (Heterodontus zebra), produced by paired-end RNA sequencing. Transcriptome data is generated with a de novo transcriptome assembler, Trinity. Amino acid sequences are predicted from the assemblies, using TransDecoder. Because cartilaginous fishes serve as the outgroup of bony vertebrates, the data would contribute to comparative analyses of a various biological fields. In addition, this study would be useful for conservation biology, such as transcriptome-based population genetics. Nature Publishing Group 2018-10-08 /pmc/articles/PMC6174923/ /pubmed/30295671 http://dx.doi.org/10.1038/sdata.2018.197 Text en Copyright © 2018, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article.
spellingShingle Data Descriptor
Onimaru, Koh
Tatsumi, Kaori
Shibagaki, Kazuhiro
Kuraku, Shigehiro
A de novo transcriptome assembly of the zebra bullhead shark, Heterodontus zebra
title A de novo transcriptome assembly of the zebra bullhead shark, Heterodontus zebra
title_full A de novo transcriptome assembly of the zebra bullhead shark, Heterodontus zebra
title_fullStr A de novo transcriptome assembly of the zebra bullhead shark, Heterodontus zebra
title_full_unstemmed A de novo transcriptome assembly of the zebra bullhead shark, Heterodontus zebra
title_short A de novo transcriptome assembly of the zebra bullhead shark, Heterodontus zebra
title_sort de novo transcriptome assembly of the zebra bullhead shark, heterodontus zebra
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6174923/
https://www.ncbi.nlm.nih.gov/pubmed/30295671
http://dx.doi.org/10.1038/sdata.2018.197
work_keys_str_mv AT onimarukoh adenovotranscriptomeassemblyofthezebrabullheadsharkheterodontuszebra
AT tatsumikaori adenovotranscriptomeassemblyofthezebrabullheadsharkheterodontuszebra
AT shibagakikazuhiro adenovotranscriptomeassemblyofthezebrabullheadsharkheterodontuszebra
AT kurakushigehiro adenovotranscriptomeassemblyofthezebrabullheadsharkheterodontuszebra
AT onimarukoh denovotranscriptomeassemblyofthezebrabullheadsharkheterodontuszebra
AT tatsumikaori denovotranscriptomeassemblyofthezebrabullheadsharkheterodontuszebra
AT shibagakikazuhiro denovotranscriptomeassemblyofthezebrabullheadsharkheterodontuszebra
AT kurakushigehiro denovotranscriptomeassemblyofthezebrabullheadsharkheterodontuszebra

Ejemplares similares