Cargando…
Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations
Accurate and physiologically meaningful biomarkers for human aging are key to assessing antiaging therapies. Given ethnic differences in health, diet, lifestyle, behavior, environmental exposures, and even average rate of biological aging, it stands to reason that aging clocks trained on datasets ob...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6175034/ https://www.ncbi.nlm.nih.gov/pubmed/29340580 http://dx.doi.org/10.1093/gerona/gly005 |
_version_ | 1783361411669295104 |
---|---|
author | Mamoshina, Polina Kochetov, Kirill Putin, Evgeny Cortese, Franco Aliper, Alexander Lee, Won-Suk Ahn, Sung-Min Uhn, Lee Skjodt, Neil Kovalchuk, Olga Scheibye-Knudsen, Morten Zhavoronkov, Alex |
author_facet | Mamoshina, Polina Kochetov, Kirill Putin, Evgeny Cortese, Franco Aliper, Alexander Lee, Won-Suk Ahn, Sung-Min Uhn, Lee Skjodt, Neil Kovalchuk, Olga Scheibye-Knudsen, Morten Zhavoronkov, Alex |
author_sort | Mamoshina, Polina |
collection | PubMed |
description | Accurate and physiologically meaningful biomarkers for human aging are key to assessing antiaging therapies. Given ethnic differences in health, diet, lifestyle, behavior, environmental exposures, and even average rate of biological aging, it stands to reason that aging clocks trained on datasets obtained from specific ethnic populations are more likely to account for these potential confounding factors, resulting in an enhanced capacity to predict chronological age and quantify biological age. Here, we present a deep learning-based hematological aging clock modeled using the large combined dataset of Canadian, South Korean, and Eastern European population blood samples that show increased predictive accuracy in individual populations compared to population specific hematologic aging clocks. The performance of models was also evaluated on publicly available samples of the American population from the National Health and Nutrition Examination Survey (NHANES). In addition, we explored the association between age predicted by both population specific and combined hematological clocks and all-cause mortality. Overall, this study suggests (a) the population specificity of aging patterns and (b) hematologic clocks predicts all-cause mortality. The proposed models were added to the freely-available Aging.AI system expanding the range of tools for analysis of human aging. |
format | Online Article Text |
id | pubmed-6175034 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-61750342018-10-11 Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations Mamoshina, Polina Kochetov, Kirill Putin, Evgeny Cortese, Franco Aliper, Alexander Lee, Won-Suk Ahn, Sung-Min Uhn, Lee Skjodt, Neil Kovalchuk, Olga Scheibye-Knudsen, Morten Zhavoronkov, Alex J Gerontol A Biol Sci Med Sci The Journal of Gerontology: Biological Sciences Accurate and physiologically meaningful biomarkers for human aging are key to assessing antiaging therapies. Given ethnic differences in health, diet, lifestyle, behavior, environmental exposures, and even average rate of biological aging, it stands to reason that aging clocks trained on datasets obtained from specific ethnic populations are more likely to account for these potential confounding factors, resulting in an enhanced capacity to predict chronological age and quantify biological age. Here, we present a deep learning-based hematological aging clock modeled using the large combined dataset of Canadian, South Korean, and Eastern European population blood samples that show increased predictive accuracy in individual populations compared to population specific hematologic aging clocks. The performance of models was also evaluated on publicly available samples of the American population from the National Health and Nutrition Examination Survey (NHANES). In addition, we explored the association between age predicted by both population specific and combined hematological clocks and all-cause mortality. Overall, this study suggests (a) the population specificity of aging patterns and (b) hematologic clocks predicts all-cause mortality. The proposed models were added to the freely-available Aging.AI system expanding the range of tools for analysis of human aging. Oxford University Press 2018-10 2018-01-11 /pmc/articles/PMC6175034/ /pubmed/29340580 http://dx.doi.org/10.1093/gerona/gly005 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of The Gerontological Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | The Journal of Gerontology: Biological Sciences Mamoshina, Polina Kochetov, Kirill Putin, Evgeny Cortese, Franco Aliper, Alexander Lee, Won-Suk Ahn, Sung-Min Uhn, Lee Skjodt, Neil Kovalchuk, Olga Scheibye-Knudsen, Morten Zhavoronkov, Alex Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations |
title | Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations |
title_full | Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations |
title_fullStr | Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations |
title_full_unstemmed | Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations |
title_short | Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations |
title_sort | population specific biomarkers of human aging: a big data study using south korean, canadian, and eastern european patient populations |
topic | The Journal of Gerontology: Biological Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6175034/ https://www.ncbi.nlm.nih.gov/pubmed/29340580 http://dx.doi.org/10.1093/gerona/gly005 |
work_keys_str_mv | AT mamoshinapolina populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations AT kochetovkirill populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations AT putinevgeny populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations AT cortesefranco populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations AT aliperalexander populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations AT leewonsuk populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations AT ahnsungmin populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations AT uhnlee populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations AT skjodtneil populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations AT kovalchukolga populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations AT scheibyeknudsenmorten populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations AT zhavoronkovalex populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations |