Cargando…

Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations

Accurate and physiologically meaningful biomarkers for human aging are key to assessing antiaging therapies. Given ethnic differences in health, diet, lifestyle, behavior, environmental exposures, and even average rate of biological aging, it stands to reason that aging clocks trained on datasets ob...

Descripción completa

Detalles Bibliográficos
Autores principales: Mamoshina, Polina, Kochetov, Kirill, Putin, Evgeny, Cortese, Franco, Aliper, Alexander, Lee, Won-Suk, Ahn, Sung-Min, Uhn, Lee, Skjodt, Neil, Kovalchuk, Olga, Scheibye-Knudsen, Morten, Zhavoronkov, Alex
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6175034/
https://www.ncbi.nlm.nih.gov/pubmed/29340580
http://dx.doi.org/10.1093/gerona/gly005
_version_ 1783361411669295104
author Mamoshina, Polina
Kochetov, Kirill
Putin, Evgeny
Cortese, Franco
Aliper, Alexander
Lee, Won-Suk
Ahn, Sung-Min
Uhn, Lee
Skjodt, Neil
Kovalchuk, Olga
Scheibye-Knudsen, Morten
Zhavoronkov, Alex
author_facet Mamoshina, Polina
Kochetov, Kirill
Putin, Evgeny
Cortese, Franco
Aliper, Alexander
Lee, Won-Suk
Ahn, Sung-Min
Uhn, Lee
Skjodt, Neil
Kovalchuk, Olga
Scheibye-Knudsen, Morten
Zhavoronkov, Alex
author_sort Mamoshina, Polina
collection PubMed
description Accurate and physiologically meaningful biomarkers for human aging are key to assessing antiaging therapies. Given ethnic differences in health, diet, lifestyle, behavior, environmental exposures, and even average rate of biological aging, it stands to reason that aging clocks trained on datasets obtained from specific ethnic populations are more likely to account for these potential confounding factors, resulting in an enhanced capacity to predict chronological age and quantify biological age. Here, we present a deep learning-based hematological aging clock modeled using the large combined dataset of Canadian, South Korean, and Eastern European population blood samples that show increased predictive accuracy in individual populations compared to population specific hematologic aging clocks. The performance of models was also evaluated on publicly available samples of the American population from the National Health and Nutrition Examination Survey (NHANES). In addition, we explored the association between age predicted by both population specific and combined hematological clocks and all-cause mortality. Overall, this study suggests (a) the population specificity of aging patterns and (b) hematologic clocks predicts all-cause mortality. The proposed models were added to the freely-available Aging.AI system expanding the range of tools for analysis of human aging.
format Online
Article
Text
id pubmed-6175034
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-61750342018-10-11 Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations Mamoshina, Polina Kochetov, Kirill Putin, Evgeny Cortese, Franco Aliper, Alexander Lee, Won-Suk Ahn, Sung-Min Uhn, Lee Skjodt, Neil Kovalchuk, Olga Scheibye-Knudsen, Morten Zhavoronkov, Alex J Gerontol A Biol Sci Med Sci The Journal of Gerontology: Biological Sciences Accurate and physiologically meaningful biomarkers for human aging are key to assessing antiaging therapies. Given ethnic differences in health, diet, lifestyle, behavior, environmental exposures, and even average rate of biological aging, it stands to reason that aging clocks trained on datasets obtained from specific ethnic populations are more likely to account for these potential confounding factors, resulting in an enhanced capacity to predict chronological age and quantify biological age. Here, we present a deep learning-based hematological aging clock modeled using the large combined dataset of Canadian, South Korean, and Eastern European population blood samples that show increased predictive accuracy in individual populations compared to population specific hematologic aging clocks. The performance of models was also evaluated on publicly available samples of the American population from the National Health and Nutrition Examination Survey (NHANES). In addition, we explored the association between age predicted by both population specific and combined hematological clocks and all-cause mortality. Overall, this study suggests (a) the population specificity of aging patterns and (b) hematologic clocks predicts all-cause mortality. The proposed models were added to the freely-available Aging.AI system expanding the range of tools for analysis of human aging. Oxford University Press 2018-10 2018-01-11 /pmc/articles/PMC6175034/ /pubmed/29340580 http://dx.doi.org/10.1093/gerona/gly005 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of The Gerontological Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle The Journal of Gerontology: Biological Sciences
Mamoshina, Polina
Kochetov, Kirill
Putin, Evgeny
Cortese, Franco
Aliper, Alexander
Lee, Won-Suk
Ahn, Sung-Min
Uhn, Lee
Skjodt, Neil
Kovalchuk, Olga
Scheibye-Knudsen, Morten
Zhavoronkov, Alex
Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations
title Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations
title_full Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations
title_fullStr Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations
title_full_unstemmed Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations
title_short Population Specific Biomarkers of Human Aging: A Big Data Study Using South Korean, Canadian, and Eastern European Patient Populations
title_sort population specific biomarkers of human aging: a big data study using south korean, canadian, and eastern european patient populations
topic The Journal of Gerontology: Biological Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6175034/
https://www.ncbi.nlm.nih.gov/pubmed/29340580
http://dx.doi.org/10.1093/gerona/gly005
work_keys_str_mv AT mamoshinapolina populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations
AT kochetovkirill populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations
AT putinevgeny populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations
AT cortesefranco populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations
AT aliperalexander populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations
AT leewonsuk populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations
AT ahnsungmin populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations
AT uhnlee populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations
AT skjodtneil populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations
AT kovalchukolga populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations
AT scheibyeknudsenmorten populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations
AT zhavoronkovalex populationspecificbiomarkersofhumanagingabigdatastudyusingsouthkoreancanadianandeasterneuropeanpatientpopulations