Cargando…

Primer selection impacts specific population abundances but not community dynamics in a monthly time‐series 16S rRNA gene amplicon analysis of coastal marine bacterioplankton

Primers targeting the 16S small subunit ribosomal RNA marker gene, used to characterize bacterial and archaeal communities, have recently been re‐evaluated for marine planktonic habitats. To investigate whether primer selection affects the ecological interpretation of bacterioplankton populations an...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wear, Emma K., Wilbanks, Elizabeth G., Nelson, Craig E., Carlson, Craig A.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley and Sons Inc. 2018
Materias:	Research Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6175402/ https://www.ncbi.nlm.nih.gov/pubmed/29521439 http://dx.doi.org/10.1111/1462-2920.14091

Ejemplares similares

Bacterioplankton communities reveal horizontal and vertical influence of an Island Mass Effect
por: Comstock, Jacqueline, et al.
Publicado: (2022)

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies
por: Wang, Yong, et al.
Publicado: (2009)

Improving environmental monitoring of Vibrionaceae in coastal ecosystems through 16S rRNA gene amplicon sequencing
por: Banchi, Elisa, et al.
Publicado: (2022)

High-Throughput Sequencing of 16S rRNA Gene Amplicons: Effects of Extraction Procedure, Primer Length and Annealing Temperature
por: Sergeant, Martin J., et al.
Publicado: (2012)

Engineering CRISPR/Cas9 to mitigate abundant host contamination for 16S rRNA gene-based amplicon sequencing
por: Song, Luyang, et al.
Publicado: (2020)

The Influence of DNA Extraction Procedure and Primer Set on the Bacterial Community Analysis by Pyrosequencing of Barcoded 16S rRNA Gene Amplicons
por: Starke, Ingo C., et al.
Publicado: (2014)

Seasonal Variation of Microbial Diversity of Coastal Sediment in Tongyeong, South Korea, Using 16S rRNA Gene Amplicon Sequencing
por: Oktavitri, Nur Indradewi, et al.
Publicado: (2021)

16S rRNA Gene Amplicon Sequencing of Contaminated Coastal Sediment Collected from the Taehwa River Estuary, South Korea
por: Woo, Hee-eun, et al.
Publicado: (2021)

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys
por: Nelson, Michael C., et al.
Publicado: (2014)

The effect of low-abundance OTU filtering methods on the reliability and variability of microbial composition assessed by 16S rRNA amplicon sequencing
por: Nikodemova, Maria, et al.
Publicado: (2023)

Analysis of the Microbial Community Structure in Coastal Sediment of an Ascidian Farm in South Korea through 16S rRNA Gene Amplicon Sequencing
por: Jeong, Ilwon, et al.
Publicado: (2021)

16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in Wildlife
por: Galan, Maxime, et al.
Publicado: (2016)

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing
por: Prodan, Andrei, et al.
Publicado: (2020)

Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts
por: Mondav, Rhiannon, et al.
Publicado: (2020)

Exploring thematic structure and predicted functionality of 16S rRNA amplicon data
por: Woloszynek, Stephen, et al.
Publicado: (2019)

Processing human urine and ureteral stents for 16S rRNA amplicon sequencing
por: Al, Kait F., et al.
Publicado: (2021)

Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton
por: Bryson, Samuel, et al.
Publicado: (2016)

Species-Specific Differences in the Microbiomes and Organic Exudates of Crustose Coralline Algae Influence Bacterioplankton Communities
por: Quinlan, Zachary A., et al.
Publicado: (2019)

Coastal Bacterioplankton Community Dynamics in Response to a Natural Disturbance
por: Yeo, Sara K., et al.
Publicado: (2013)

Identification of Associations between Bacterioplankton and Photosynthetic Picoeukaryotes in Coastal Waters
por: Farnelid, Hanna M., et al.
Publicado: (2016)

The Temporal Dynamics of Coastal Phytoplankton and Bacterioplankton in the Eastern Mediterranean Sea
por: Raveh, Ofrat, et al.
Publicado: (2015)

Bacterioplankton Activity in a Meso-eutrophic Subtropical Coastal Lagoon
por: Schmitz Fontes, Maria L., et al.
Publicado: (2018)

Distinct Seasonal Patterns of Bacterioplankton Abundance and Dominance of Phyla α-Proteobacteria and Cyanobacteria in Qinhuangdao Coastal Waters Off the Bohai Sea
por: He, Yaodong, et al.
Publicado: (2017)

Primer and platform effects on 16S rRNA tag sequencing
por: Tremblay, Julien, et al.
Publicado: (2015)

16S rRNA gene amplicon dataset of prokaryotic communities from a subantarctic marine ecosystem: Ushuaia Bay and surrounding waters
por: Rodríguez-Flórez, Clara Natalia, et al.
Publicado: (2020)

MinION™ Nanopore Sequencing of Skin Microbiome 16S and 16S-23S rRNA Gene Amplicons
por: Rozas, Miquel, et al.
Publicado: (2022)

Changes in Bacterioplankton Communities Resulting From Direct and Indirect Interactions With Trace Metal Gradients in an Urbanized Marine Coastal Area
por: Coclet, Clément, et al.
Publicado: (2019)

16S rRNA amplicon sequencing dataset for conventionalized and conventionally raised zebrafish larvae
por: Davis, Daniel J., et al.
Publicado: (2016)

Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing
por: Tourlousse, Dieter M., et al.
Publicado: (2017)

16S rRNA Gene Amplicon Profiling of Baby and Adult Captive Elephants in Thailand
por: Kandel, Sangam, et al.
Publicado: (2020)

16S rRNA Gene Amplicon Sequencing Data for Pteris vittata Rhizosphere Soils
por: Mu’azu, Aminu Salisu, et al.
Publicado: (2023)

Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
por: Zhao, Jun, et al.
Publicado: (2023)

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon
por: Poretsky, Rachel S, et al.
Publicado: (2010)

Linking activity and function to ecosystem dynamics in a coastal bacterioplankton community
por: Gifford, Scott M., et al.
Publicado: (2014)

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms
por: Teeling, Hanno, et al.
Publicado: (2016)

Coupling Bacterioplankton Populations and Environment to Community Function in Coastal Temperate Waters
por: Traving, Sachia J., et al.
Publicado: (2016)

Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing
por: Abellan-Schneyder, Isabel, et al.
Publicado: (2021)

Abundance-Occupancy Relationships Along Taxonomic Ranks Reveal a Consistency of Niche Differentiation in Marine Bacterioplankton With Distinct Lifestyles
por: Izabel-Shen, Dandan, et al.
Publicado: (2021)

Investigation of Detection Limits and the Influence of DNA Extraction and Primer Choice on the Observed Microbial Communities in Drinking Water Samples Using 16S rRNA Gene Amplicon Sequencing
por: Brandt, Jakob, et al.
Publicado: (2018)

Evaluating Established Methods for Rumen 16S rRNA Amplicon Sequencing With Mock Microbial Populations
por: McGovern, Emily, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_sruupk9lsc9j2q74edhdij3nsm