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An integrative approach using real-world data to identify alternative therapeutic uses of existing drugs

Different computational approaches are employed to efficiently identify novel repositioning possibilities utilizing different sources of information and algorithms. It is critical to propose high-valued candidate-repositioning possibilities before conducting lengthy in vivo validation studies that c...

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Autores principales: Hosomi, Kouichi, Fujimoto, Mai, Ushio, Kazutaka, Mao, Lili, Kato, Juran, Takada, Mitsutaka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6177143/
https://www.ncbi.nlm.nih.gov/pubmed/30300381
http://dx.doi.org/10.1371/journal.pone.0204648
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author Hosomi, Kouichi
Fujimoto, Mai
Ushio, Kazutaka
Mao, Lili
Kato, Juran
Takada, Mitsutaka
author_facet Hosomi, Kouichi
Fujimoto, Mai
Ushio, Kazutaka
Mao, Lili
Kato, Juran
Takada, Mitsutaka
author_sort Hosomi, Kouichi
collection PubMed
description Different computational approaches are employed to efficiently identify novel repositioning possibilities utilizing different sources of information and algorithms. It is critical to propose high-valued candidate-repositioning possibilities before conducting lengthy in vivo validation studies that consume significant resources. Here we report a novel multi-methodological approach to identify opportunities for drug repositioning. We performed analyses of real-world data (RWD) acquired from the United States Food and Drug Administration’s Adverse Event Reporting System (FAERS) and the claims database maintained by the Japan Medical Data Center (JMDC). These analyses were followed by cross-validation through bioinformatics analyses of gene expression data. Inverse associations revealed using disproportionality analysis (DPA) and sequence symmetry analysis (SSA) were used to detect potential drug-repositioning signals. To evaluate the validity of the approach, we conducted a feasibility study to identify marketed drugs with the potential for treating inflammatory bowel disease (IBD). Primary analyses of the FAERS and JMDC claims databases identified psycholeptics such as haloperidol, diazepam, and hydroxyzine as candidates that may improve the treatment of IBD. To further investigate the mechanistic relevance between hit compounds and disease pathology, we conducted bioinformatics analyses of the associations of the gene expression profiles of these compounds with disease. We identified common biological features among genes differentially expressed with or without compound treatment as well as disease-perturbation data available from open sources, which strengthened the mechanistic rationale of our initial findings. We further identified pathways such as cytokine signaling that are influenced by these drugs. These pathways are relevant to pathologies and can serve as alternative targets of therapy. Integrative analysis of RWD such as those available from adverse-event databases, claims databases, and transcriptome analyses represent an effective approach that adds value to efficiently identifying potential novel therapeutic opportunities.
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spelling pubmed-61771432018-10-19 An integrative approach using real-world data to identify alternative therapeutic uses of existing drugs Hosomi, Kouichi Fujimoto, Mai Ushio, Kazutaka Mao, Lili Kato, Juran Takada, Mitsutaka PLoS One Research Article Different computational approaches are employed to efficiently identify novel repositioning possibilities utilizing different sources of information and algorithms. It is critical to propose high-valued candidate-repositioning possibilities before conducting lengthy in vivo validation studies that consume significant resources. Here we report a novel multi-methodological approach to identify opportunities for drug repositioning. We performed analyses of real-world data (RWD) acquired from the United States Food and Drug Administration’s Adverse Event Reporting System (FAERS) and the claims database maintained by the Japan Medical Data Center (JMDC). These analyses were followed by cross-validation through bioinformatics analyses of gene expression data. Inverse associations revealed using disproportionality analysis (DPA) and sequence symmetry analysis (SSA) were used to detect potential drug-repositioning signals. To evaluate the validity of the approach, we conducted a feasibility study to identify marketed drugs with the potential for treating inflammatory bowel disease (IBD). Primary analyses of the FAERS and JMDC claims databases identified psycholeptics such as haloperidol, diazepam, and hydroxyzine as candidates that may improve the treatment of IBD. To further investigate the mechanistic relevance between hit compounds and disease pathology, we conducted bioinformatics analyses of the associations of the gene expression profiles of these compounds with disease. We identified common biological features among genes differentially expressed with or without compound treatment as well as disease-perturbation data available from open sources, which strengthened the mechanistic rationale of our initial findings. We further identified pathways such as cytokine signaling that are influenced by these drugs. These pathways are relevant to pathologies and can serve as alternative targets of therapy. Integrative analysis of RWD such as those available from adverse-event databases, claims databases, and transcriptome analyses represent an effective approach that adds value to efficiently identifying potential novel therapeutic opportunities. Public Library of Science 2018-10-09 /pmc/articles/PMC6177143/ /pubmed/30300381 http://dx.doi.org/10.1371/journal.pone.0204648 Text en © 2018 Hosomi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hosomi, Kouichi
Fujimoto, Mai
Ushio, Kazutaka
Mao, Lili
Kato, Juran
Takada, Mitsutaka
An integrative approach using real-world data to identify alternative therapeutic uses of existing drugs
title An integrative approach using real-world data to identify alternative therapeutic uses of existing drugs
title_full An integrative approach using real-world data to identify alternative therapeutic uses of existing drugs
title_fullStr An integrative approach using real-world data to identify alternative therapeutic uses of existing drugs
title_full_unstemmed An integrative approach using real-world data to identify alternative therapeutic uses of existing drugs
title_short An integrative approach using real-world data to identify alternative therapeutic uses of existing drugs
title_sort integrative approach using real-world data to identify alternative therapeutic uses of existing drugs
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6177143/
https://www.ncbi.nlm.nih.gov/pubmed/30300381
http://dx.doi.org/10.1371/journal.pone.0204648
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