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Power law fitness landscapes and their ability to predict fitness
Whether or not evolution by natural selection is predictable depends on the existence of general patterns shaping the way mutations interact with the genetic background. This interaction, also known as epistasis, has been observed during adaptation (macroscopic epistasis) and in individual mutations...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6180038/ https://www.ncbi.nlm.nih.gov/pubmed/30190560 http://dx.doi.org/10.1038/s41437-018-0143-5 |
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author | Passagem-Santos, Diogo Zacarias, Simone Perfeito, Lilia |
author_facet | Passagem-Santos, Diogo Zacarias, Simone Perfeito, Lilia |
author_sort | Passagem-Santos, Diogo |
collection | PubMed |
description | Whether or not evolution by natural selection is predictable depends on the existence of general patterns shaping the way mutations interact with the genetic background. This interaction, also known as epistasis, has been observed during adaptation (macroscopic epistasis) and in individual mutations (microscopic epistasis). Interestingly, a consistent negative correlation between the fitness effect of beneficial mutations and background fitness (known as diminishing returns epistasis) has been observed across different species and conditions. We tested whether the adaptation pattern of an additional species, Schizosaccharomyces pombe, followed the same trend. We used strains that differed by the presence of large karyotype differences and observed the same pattern of fitness convergence. Using these data along with published datasets, we measured the ability of different models to describe adaptation rates. We found that a phenotype-fitness landscape shaped like a power law is able to correctly predict adaptation dynamics in a variety of species and conditions. Furthermore we show that this model can provide a link between the observed macroscopic and microscopic epistasis. It may be very useful in the development of algorithms able to predict the adaptation of microorganisms from measures of the current phenotypes. Overall, our results suggest that even though adaptation quickly slows down, populations adapting to lab conditions may be quite far from a fitness peak. |
format | Online Article Text |
id | pubmed-6180038 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-61800382018-10-15 Power law fitness landscapes and their ability to predict fitness Passagem-Santos, Diogo Zacarias, Simone Perfeito, Lilia Heredity (Edinb) Article Whether or not evolution by natural selection is predictable depends on the existence of general patterns shaping the way mutations interact with the genetic background. This interaction, also known as epistasis, has been observed during adaptation (macroscopic epistasis) and in individual mutations (microscopic epistasis). Interestingly, a consistent negative correlation between the fitness effect of beneficial mutations and background fitness (known as diminishing returns epistasis) has been observed across different species and conditions. We tested whether the adaptation pattern of an additional species, Schizosaccharomyces pombe, followed the same trend. We used strains that differed by the presence of large karyotype differences and observed the same pattern of fitness convergence. Using these data along with published datasets, we measured the ability of different models to describe adaptation rates. We found that a phenotype-fitness landscape shaped like a power law is able to correctly predict adaptation dynamics in a variety of species and conditions. Furthermore we show that this model can provide a link between the observed macroscopic and microscopic epistasis. It may be very useful in the development of algorithms able to predict the adaptation of microorganisms from measures of the current phenotypes. Overall, our results suggest that even though adaptation quickly slows down, populations adapting to lab conditions may be quite far from a fitness peak. Springer International Publishing 2018-09-06 2018-11 /pmc/articles/PMC6180038/ /pubmed/30190560 http://dx.doi.org/10.1038/s41437-018-0143-5 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Passagem-Santos, Diogo Zacarias, Simone Perfeito, Lilia Power law fitness landscapes and their ability to predict fitness |
title | Power law fitness landscapes and their ability to predict fitness |
title_full | Power law fitness landscapes and their ability to predict fitness |
title_fullStr | Power law fitness landscapes and their ability to predict fitness |
title_full_unstemmed | Power law fitness landscapes and their ability to predict fitness |
title_short | Power law fitness landscapes and their ability to predict fitness |
title_sort | power law fitness landscapes and their ability to predict fitness |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6180038/ https://www.ncbi.nlm.nih.gov/pubmed/30190560 http://dx.doi.org/10.1038/s41437-018-0143-5 |
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