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The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil

Planococcus maritimus Y42, isolated from the petroleum-contaminated soil of the Qaidam Basin, can use crude oil as its sole source of carbon and energy at 20 °C. The genome of P. maritimus strain Y42 has been sequenced to provide information on its properties. Genomic analysis shows that the genome...

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Autores principales: Yang, Ruiqi, Liu, Guangxiu, Chen, Tuo, Zhang, Wei, Zhang, Gaosen, Chang, Sijing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6180392/
https://www.ncbi.nlm.nih.gov/pubmed/30338026
http://dx.doi.org/10.1186/s40793-018-0328-9
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author Yang, Ruiqi
Liu, Guangxiu
Chen, Tuo
Zhang, Wei
Zhang, Gaosen
Chang, Sijing
author_facet Yang, Ruiqi
Liu, Guangxiu
Chen, Tuo
Zhang, Wei
Zhang, Gaosen
Chang, Sijing
author_sort Yang, Ruiqi
collection PubMed
description Planococcus maritimus Y42, isolated from the petroleum-contaminated soil of the Qaidam Basin, can use crude oil as its sole source of carbon and energy at 20 °C. The genome of P. maritimus strain Y42 has been sequenced to provide information on its properties. Genomic analysis shows that the genome of strain Y42 contains one circular DNA chromosome with a size of 3,718,896 bp and a GC content of 48.8%, and three plasmids (329,482; 89,073; and 12,282 bp). Although the strain Y42 did not show a remarkably higher ability in degrading crude oil than other oil-degrading bacteria, the existence of strain Y42 played a significant role to reducing the overall environmental impact as an indigenous oil-degrading bacterium. In addition, genome annotation revealed that strain Y42 has many genes responsible for hydrocarbon degradation. Structural features of the genomes might provide a competitive edge for P. maritimus strain Y42 to survive in oil-polluted environments and be worthy of further study in oil degradation for the recovery of crude oil-polluted environments.
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spelling pubmed-61803922018-10-18 The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil Yang, Ruiqi Liu, Guangxiu Chen, Tuo Zhang, Wei Zhang, Gaosen Chang, Sijing Stand Genomic Sci Extended Genome Report Planococcus maritimus Y42, isolated from the petroleum-contaminated soil of the Qaidam Basin, can use crude oil as its sole source of carbon and energy at 20 °C. The genome of P. maritimus strain Y42 has been sequenced to provide information on its properties. Genomic analysis shows that the genome of strain Y42 contains one circular DNA chromosome with a size of 3,718,896 bp and a GC content of 48.8%, and three plasmids (329,482; 89,073; and 12,282 bp). Although the strain Y42 did not show a remarkably higher ability in degrading crude oil than other oil-degrading bacteria, the existence of strain Y42 played a significant role to reducing the overall environmental impact as an indigenous oil-degrading bacterium. In addition, genome annotation revealed that strain Y42 has many genes responsible for hydrocarbon degradation. Structural features of the genomes might provide a competitive edge for P. maritimus strain Y42 to survive in oil-polluted environments and be worthy of further study in oil degradation for the recovery of crude oil-polluted environments. BioMed Central 2018-10-10 /pmc/articles/PMC6180392/ /pubmed/30338026 http://dx.doi.org/10.1186/s40793-018-0328-9 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Extended Genome Report
Yang, Ruiqi
Liu, Guangxiu
Chen, Tuo
Zhang, Wei
Zhang, Gaosen
Chang, Sijing
The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil
title The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil
title_full The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil
title_fullStr The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil
title_full_unstemmed The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil
title_short The complete genomic sequence of a novel cold-adapted bacterium, Planococcus maritimus Y42, isolated from crude oil-contaminated soil
title_sort complete genomic sequence of a novel cold-adapted bacterium, planococcus maritimus y42, isolated from crude oil-contaminated soil
topic Extended Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6180392/
https://www.ncbi.nlm.nih.gov/pubmed/30338026
http://dx.doi.org/10.1186/s40793-018-0328-9
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