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Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii

Next-generation technologies have prompted efforts towards generating a large repertoire of whole-genome sequences. The dermatophyte Arthroderma vanbreuseghemii has been considered as a good model in which to conduct molecular biological studies on this fungal group. Despite the considerable reperto...

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Autores principales: Alshahni, Mohamed Mahdi, Yamada, Tsuyoshi, Yo, Ayaka, Murayama, Somay Y., Kuroda, Makoto, Hoshino, Yasutaka, Ishikawa, Jun, Watanabe, Shinichi, Makimura, Koichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6181936/
https://www.ncbi.nlm.nih.gov/pubmed/30310114
http://dx.doi.org/10.1038/s41598-018-33505-9
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author Alshahni, Mohamed Mahdi
Yamada, Tsuyoshi
Yo, Ayaka
Murayama, Somay Y.
Kuroda, Makoto
Hoshino, Yasutaka
Ishikawa, Jun
Watanabe, Shinichi
Makimura, Koichi
author_facet Alshahni, Mohamed Mahdi
Yamada, Tsuyoshi
Yo, Ayaka
Murayama, Somay Y.
Kuroda, Makoto
Hoshino, Yasutaka
Ishikawa, Jun
Watanabe, Shinichi
Makimura, Koichi
author_sort Alshahni, Mohamed Mahdi
collection PubMed
description Next-generation technologies have prompted efforts towards generating a large repertoire of whole-genome sequences. The dermatophyte Arthroderma vanbreuseghemii has been considered as a good model in which to conduct molecular biological studies on this fungal group. Despite the considerable repertoire of molecular tools developed for this fungus, the lack of genomic data has represented a major limitation, preventing effective implementation of those tools. Herein, the authors report the first draft whole-genome sequence of this dermatophytic species. The size of the draft genome was 23 Mb, exhibiting a GC content of 48.1%. Given the significance of secreted proteases in tissue invasion, a comparative analysis of genes encoding extracellular proteases was performed between A. vanbreuseghemii and other dermatophytes. Furthermore, genes that might be involved in DNA repair also were compared among dermatophytes. Moreover, the complete mitochondrial genome of A. vanbreuseghemii was obtained and shown to consist of 24,287 bp with a GC content of 24%. In conclusion, the availability of genomic data for A. vanbreuseghemii is expected to facilitate the implementation of the molecular tools established for this fungus, enhancing our understanding of the biology of dermatophytes.
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spelling pubmed-61819362018-10-15 Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii Alshahni, Mohamed Mahdi Yamada, Tsuyoshi Yo, Ayaka Murayama, Somay Y. Kuroda, Makoto Hoshino, Yasutaka Ishikawa, Jun Watanabe, Shinichi Makimura, Koichi Sci Rep Article Next-generation technologies have prompted efforts towards generating a large repertoire of whole-genome sequences. The dermatophyte Arthroderma vanbreuseghemii has been considered as a good model in which to conduct molecular biological studies on this fungal group. Despite the considerable repertoire of molecular tools developed for this fungus, the lack of genomic data has represented a major limitation, preventing effective implementation of those tools. Herein, the authors report the first draft whole-genome sequence of this dermatophytic species. The size of the draft genome was 23 Mb, exhibiting a GC content of 48.1%. Given the significance of secreted proteases in tissue invasion, a comparative analysis of genes encoding extracellular proteases was performed between A. vanbreuseghemii and other dermatophytes. Furthermore, genes that might be involved in DNA repair also were compared among dermatophytes. Moreover, the complete mitochondrial genome of A. vanbreuseghemii was obtained and shown to consist of 24,287 bp with a GC content of 24%. In conclusion, the availability of genomic data for A. vanbreuseghemii is expected to facilitate the implementation of the molecular tools established for this fungus, enhancing our understanding of the biology of dermatophytes. Nature Publishing Group UK 2018-10-11 /pmc/articles/PMC6181936/ /pubmed/30310114 http://dx.doi.org/10.1038/s41598-018-33505-9 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Alshahni, Mohamed Mahdi
Yamada, Tsuyoshi
Yo, Ayaka
Murayama, Somay Y.
Kuroda, Makoto
Hoshino, Yasutaka
Ishikawa, Jun
Watanabe, Shinichi
Makimura, Koichi
Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii
title Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii
title_full Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii
title_fullStr Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii
title_full_unstemmed Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii
title_short Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii
title_sort insight into the draft whole-genome sequence of the dermatophyte arthroderma vanbreuseghemii
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6181936/
https://www.ncbi.nlm.nih.gov/pubmed/30310114
http://dx.doi.org/10.1038/s41598-018-33505-9
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