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Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii
Next-generation technologies have prompted efforts towards generating a large repertoire of whole-genome sequences. The dermatophyte Arthroderma vanbreuseghemii has been considered as a good model in which to conduct molecular biological studies on this fungal group. Despite the considerable reperto...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6181936/ https://www.ncbi.nlm.nih.gov/pubmed/30310114 http://dx.doi.org/10.1038/s41598-018-33505-9 |
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author | Alshahni, Mohamed Mahdi Yamada, Tsuyoshi Yo, Ayaka Murayama, Somay Y. Kuroda, Makoto Hoshino, Yasutaka Ishikawa, Jun Watanabe, Shinichi Makimura, Koichi |
author_facet | Alshahni, Mohamed Mahdi Yamada, Tsuyoshi Yo, Ayaka Murayama, Somay Y. Kuroda, Makoto Hoshino, Yasutaka Ishikawa, Jun Watanabe, Shinichi Makimura, Koichi |
author_sort | Alshahni, Mohamed Mahdi |
collection | PubMed |
description | Next-generation technologies have prompted efforts towards generating a large repertoire of whole-genome sequences. The dermatophyte Arthroderma vanbreuseghemii has been considered as a good model in which to conduct molecular biological studies on this fungal group. Despite the considerable repertoire of molecular tools developed for this fungus, the lack of genomic data has represented a major limitation, preventing effective implementation of those tools. Herein, the authors report the first draft whole-genome sequence of this dermatophytic species. The size of the draft genome was 23 Mb, exhibiting a GC content of 48.1%. Given the significance of secreted proteases in tissue invasion, a comparative analysis of genes encoding extracellular proteases was performed between A. vanbreuseghemii and other dermatophytes. Furthermore, genes that might be involved in DNA repair also were compared among dermatophytes. Moreover, the complete mitochondrial genome of A. vanbreuseghemii was obtained and shown to consist of 24,287 bp with a GC content of 24%. In conclusion, the availability of genomic data for A. vanbreuseghemii is expected to facilitate the implementation of the molecular tools established for this fungus, enhancing our understanding of the biology of dermatophytes. |
format | Online Article Text |
id | pubmed-6181936 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-61819362018-10-15 Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii Alshahni, Mohamed Mahdi Yamada, Tsuyoshi Yo, Ayaka Murayama, Somay Y. Kuroda, Makoto Hoshino, Yasutaka Ishikawa, Jun Watanabe, Shinichi Makimura, Koichi Sci Rep Article Next-generation technologies have prompted efforts towards generating a large repertoire of whole-genome sequences. The dermatophyte Arthroderma vanbreuseghemii has been considered as a good model in which to conduct molecular biological studies on this fungal group. Despite the considerable repertoire of molecular tools developed for this fungus, the lack of genomic data has represented a major limitation, preventing effective implementation of those tools. Herein, the authors report the first draft whole-genome sequence of this dermatophytic species. The size of the draft genome was 23 Mb, exhibiting a GC content of 48.1%. Given the significance of secreted proteases in tissue invasion, a comparative analysis of genes encoding extracellular proteases was performed between A. vanbreuseghemii and other dermatophytes. Furthermore, genes that might be involved in DNA repair also were compared among dermatophytes. Moreover, the complete mitochondrial genome of A. vanbreuseghemii was obtained and shown to consist of 24,287 bp with a GC content of 24%. In conclusion, the availability of genomic data for A. vanbreuseghemii is expected to facilitate the implementation of the molecular tools established for this fungus, enhancing our understanding of the biology of dermatophytes. Nature Publishing Group UK 2018-10-11 /pmc/articles/PMC6181936/ /pubmed/30310114 http://dx.doi.org/10.1038/s41598-018-33505-9 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Alshahni, Mohamed Mahdi Yamada, Tsuyoshi Yo, Ayaka Murayama, Somay Y. Kuroda, Makoto Hoshino, Yasutaka Ishikawa, Jun Watanabe, Shinichi Makimura, Koichi Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii |
title | Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii |
title_full | Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii |
title_fullStr | Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii |
title_full_unstemmed | Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii |
title_short | Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemii |
title_sort | insight into the draft whole-genome sequence of the dermatophyte arthroderma vanbreuseghemii |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6181936/ https://www.ncbi.nlm.nih.gov/pubmed/30310114 http://dx.doi.org/10.1038/s41598-018-33505-9 |
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