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Network Analysis of Autopsy Diagnoses: Insights into the “Cause of Death” from Unbiased Disease Clustering
BACKGROUND: Autopsies usually serve to inform specific “causes of death” and associated mechanisms. However, multiple diseases can co-exist and interact leading to a final demise. We approached autopsy-produced data using network analysis in an unbiased fashion to inform about interaction among diff...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Medknow Publications & Media Pvt Ltd
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6187936/ https://www.ncbi.nlm.nih.gov/pubmed/30450264 http://dx.doi.org/10.4103/jpi.jpi_20_18 |
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author | Celli, Romulo Divo, Miguel Colunga, Monica Celli, Bartolome Mitchell-Richards, Kisha Anne |
author_facet | Celli, Romulo Divo, Miguel Colunga, Monica Celli, Bartolome Mitchell-Richards, Kisha Anne |
author_sort | Celli, Romulo |
collection | PubMed |
description | BACKGROUND: Autopsies usually serve to inform specific “causes of death” and associated mechanisms. However, multiple diseases can co-exist and interact leading to a final demise. We approached autopsy-produced data using network analysis in an unbiased fashion to inform about interaction among different diseases and identify possible targets of system-level health care. METHODS: Reports of 261 full autopsies from one institution between 2011 and 2013 were reviewed. Comorbidities were recorded and their Spearman's association coefficients were calculated. Highly associated comorbidities (P < 0.01) were selected to construct a network in which each disease is represented by a node, and each link between the nodes represents significant co-occurrence. RESULTS: The network comprised 140 diseases connected by 419 links. The mean number of connections per node was 6. The most highly connected nodes (“hubs”) represented infectious processes, whereas less connected nodes represented neoplasms and other chronic diseases. Eight clusters of biologically plausible associated diseases were identified. CONCLUSIONS: There is an unbiased relationship among autopsy-identified diseases. There were “hubs” (primarily infectious) with significantly more associations than others that could represent obligatory or important modulators of the final expression of other diseases. Clusters of co-occurring diseases, or “modules,” suggest the presence of clinically relevant presentations of pathobiologically related entities which are until now considered individual diseases. These modules may occur together prior to death and be amenable to interventions during life. |
format | Online Article Text |
id | pubmed-6187936 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Medknow Publications & Media Pvt Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-61879362018-11-16 Network Analysis of Autopsy Diagnoses: Insights into the “Cause of Death” from Unbiased Disease Clustering Celli, Romulo Divo, Miguel Colunga, Monica Celli, Bartolome Mitchell-Richards, Kisha Anne J Pathol Inform Original Article BACKGROUND: Autopsies usually serve to inform specific “causes of death” and associated mechanisms. However, multiple diseases can co-exist and interact leading to a final demise. We approached autopsy-produced data using network analysis in an unbiased fashion to inform about interaction among different diseases and identify possible targets of system-level health care. METHODS: Reports of 261 full autopsies from one institution between 2011 and 2013 were reviewed. Comorbidities were recorded and their Spearman's association coefficients were calculated. Highly associated comorbidities (P < 0.01) were selected to construct a network in which each disease is represented by a node, and each link between the nodes represents significant co-occurrence. RESULTS: The network comprised 140 diseases connected by 419 links. The mean number of connections per node was 6. The most highly connected nodes (“hubs”) represented infectious processes, whereas less connected nodes represented neoplasms and other chronic diseases. Eight clusters of biologically plausible associated diseases were identified. CONCLUSIONS: There is an unbiased relationship among autopsy-identified diseases. There were “hubs” (primarily infectious) with significantly more associations than others that could represent obligatory or important modulators of the final expression of other diseases. Clusters of co-occurring diseases, or “modules,” suggest the presence of clinically relevant presentations of pathobiologically related entities which are until now considered individual diseases. These modules may occur together prior to death and be amenable to interventions during life. Medknow Publications & Media Pvt Ltd 2018-10-09 /pmc/articles/PMC6187936/ /pubmed/30450264 http://dx.doi.org/10.4103/jpi.jpi_20_18 Text en Copyright: © 2018 Journal of Pathology Informatics http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms. |
spellingShingle | Original Article Celli, Romulo Divo, Miguel Colunga, Monica Celli, Bartolome Mitchell-Richards, Kisha Anne Network Analysis of Autopsy Diagnoses: Insights into the “Cause of Death” from Unbiased Disease Clustering |
title | Network Analysis of Autopsy Diagnoses: Insights into the “Cause of Death” from Unbiased Disease Clustering |
title_full | Network Analysis of Autopsy Diagnoses: Insights into the “Cause of Death” from Unbiased Disease Clustering |
title_fullStr | Network Analysis of Autopsy Diagnoses: Insights into the “Cause of Death” from Unbiased Disease Clustering |
title_full_unstemmed | Network Analysis of Autopsy Diagnoses: Insights into the “Cause of Death” from Unbiased Disease Clustering |
title_short | Network Analysis of Autopsy Diagnoses: Insights into the “Cause of Death” from Unbiased Disease Clustering |
title_sort | network analysis of autopsy diagnoses: insights into the “cause of death” from unbiased disease clustering |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6187936/ https://www.ncbi.nlm.nih.gov/pubmed/30450264 http://dx.doi.org/10.4103/jpi.jpi_20_18 |
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