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Why twenty amino acid residue types suffice(d) to support all living systems
It is well known that proteins are built up from an alphabet of 20 different amino acid types. These suffice to enable the protein to fold into its operative form relevant to its required functional roles. For carrying out these allotted functions, there may in some cases be a need for post-translat...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6188899/ https://www.ncbi.nlm.nih.gov/pubmed/30321190 http://dx.doi.org/10.1371/journal.pone.0204883 |
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author | Bywater, Robert P. |
author_facet | Bywater, Robert P. |
author_sort | Bywater, Robert P. |
collection | PubMed |
description | It is well known that proteins are built up from an alphabet of 20 different amino acid types. These suffice to enable the protein to fold into its operative form relevant to its required functional roles. For carrying out these allotted functions, there may in some cases be a need for post-translational modifications and it has been established that an additional three types of amino acid have at some point been recruited into this process. But it still remains the case that the 20 residue types referred to are the major building blocks in all terrestrial proteins, and probably "universally". Given this fact, it is surprising that no satisfactory answer has been given to the two questions: "why 20?" and "why just these 20?". Furthermore, a suggestion is made as to how these 20 map to the codon repertoire which in principle has the capacity to cater for 64 different residue types. Attempts are made in this paper to answer these questions by employing a combination of quantum chemical and chemoinformatic tools which are applied to the standard 20 amino acid types as well as 3 “non-standard” types found in nature, a set of fictitious but feasible analog structures designed to test the need for greater coverage of function space and the collection of candidate alternative structures found either on meteorites or in experiments designed to reconstruct pre-life scenarios. |
format | Online Article Text |
id | pubmed-6188899 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-61888992018-10-25 Why twenty amino acid residue types suffice(d) to support all living systems Bywater, Robert P. PLoS One Research Article It is well known that proteins are built up from an alphabet of 20 different amino acid types. These suffice to enable the protein to fold into its operative form relevant to its required functional roles. For carrying out these allotted functions, there may in some cases be a need for post-translational modifications and it has been established that an additional three types of amino acid have at some point been recruited into this process. But it still remains the case that the 20 residue types referred to are the major building blocks in all terrestrial proteins, and probably "universally". Given this fact, it is surprising that no satisfactory answer has been given to the two questions: "why 20?" and "why just these 20?". Furthermore, a suggestion is made as to how these 20 map to the codon repertoire which in principle has the capacity to cater for 64 different residue types. Attempts are made in this paper to answer these questions by employing a combination of quantum chemical and chemoinformatic tools which are applied to the standard 20 amino acid types as well as 3 “non-standard” types found in nature, a set of fictitious but feasible analog structures designed to test the need for greater coverage of function space and the collection of candidate alternative structures found either on meteorites or in experiments designed to reconstruct pre-life scenarios. Public Library of Science 2018-10-15 /pmc/articles/PMC6188899/ /pubmed/30321190 http://dx.doi.org/10.1371/journal.pone.0204883 Text en © 2018 Robert P. Bywater http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Bywater, Robert P. Why twenty amino acid residue types suffice(d) to support all living systems |
title | Why twenty amino acid residue types suffice(d) to support all living systems |
title_full | Why twenty amino acid residue types suffice(d) to support all living systems |
title_fullStr | Why twenty amino acid residue types suffice(d) to support all living systems |
title_full_unstemmed | Why twenty amino acid residue types suffice(d) to support all living systems |
title_short | Why twenty amino acid residue types suffice(d) to support all living systems |
title_sort | why twenty amino acid residue types suffice(d) to support all living systems |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6188899/ https://www.ncbi.nlm.nih.gov/pubmed/30321190 http://dx.doi.org/10.1371/journal.pone.0204883 |
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