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Radio-pathomic Maps of Epithelium and Lumen Density Predict the Location of High-Grade Prostate Cancer
PURPOSE: This study aims to combine multiparametric magnetic resonance imaging (MRI) and digitized pathology with machine learning to generate predictive maps of histologic features for prostate cancer localization. METHODS AND MATERIALS: Thirty-nine patients underwent MRI prior to prostatectomy. Af...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6190585/ https://www.ncbi.nlm.nih.gov/pubmed/29908785 http://dx.doi.org/10.1016/j.ijrobp.2018.04.044 |
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author | McGarry, Sean D. Hurrell, Sarah L. Iczkowski, Kenneth A. Hall, William Kaczmarowski, Amy L. Banerjee, Anjishnu Keuter, Tucker Jacobsohn, Kenneth Bukowy, John D. Nevalainen, Marja T. Hohenwalter, Mark D. See, William A. LaViolette, Peter S. |
author_facet | McGarry, Sean D. Hurrell, Sarah L. Iczkowski, Kenneth A. Hall, William Kaczmarowski, Amy L. Banerjee, Anjishnu Keuter, Tucker Jacobsohn, Kenneth Bukowy, John D. Nevalainen, Marja T. Hohenwalter, Mark D. See, William A. LaViolette, Peter S. |
author_sort | McGarry, Sean D. |
collection | PubMed |
description | PURPOSE: This study aims to combine multiparametric magnetic resonance imaging (MRI) and digitized pathology with machine learning to generate predictive maps of histologic features for prostate cancer localization. METHODS AND MATERIALS: Thirty-nine patients underwent MRI prior to prostatectomy. After surgery, tissue was sliced according to MRI orientation using patient-specific 3-dimensionally printed slicing jigs. Whole-mount sections were annotated by our pathologist and digitally contoured to differentiate the lumen and epithelium. Slides were co-registered to the T2-weighted MRI scan. A learning curve was generated to determine the number of patients required for a stable machine-learning model. Patients were randomly stratified into 2 training sets and 1 test set. Two partial least-squares regression models were trained, each capable of predicting lumen and epithelium density. Predicted density values were calculated for each patient in the test dataset, mapped into the MRI space, and compared between regions confirmed as high-grade prostate cancer. RESULTS: The learning-curve analysis showed that a stable fit was achieved with data from 10 patients. Maps indicated that regions of increased epithelium and decreased lumen density, generated from each independent model, corresponded with pathologist-annotated regions of high-grade cancer. CONCLUSIONS: We present a radio-pathomic approach to mapping prostate cancer. We find that the maps are useful for highlighting high-grade tumors. This technique may be relevant for dose-painting strategies in prostate radiation therapy. © 2018 The Author(s). Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
format | Online Article Text |
id | pubmed-6190585 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
record_format | MEDLINE/PubMed |
spelling | pubmed-61905852018-10-16 Radio-pathomic Maps of Epithelium and Lumen Density Predict the Location of High-Grade Prostate Cancer McGarry, Sean D. Hurrell, Sarah L. Iczkowski, Kenneth A. Hall, William Kaczmarowski, Amy L. Banerjee, Anjishnu Keuter, Tucker Jacobsohn, Kenneth Bukowy, John D. Nevalainen, Marja T. Hohenwalter, Mark D. See, William A. LaViolette, Peter S. Int J Radiat Oncol Biol Phys Article PURPOSE: This study aims to combine multiparametric magnetic resonance imaging (MRI) and digitized pathology with machine learning to generate predictive maps of histologic features for prostate cancer localization. METHODS AND MATERIALS: Thirty-nine patients underwent MRI prior to prostatectomy. After surgery, tissue was sliced according to MRI orientation using patient-specific 3-dimensionally printed slicing jigs. Whole-mount sections were annotated by our pathologist and digitally contoured to differentiate the lumen and epithelium. Slides were co-registered to the T2-weighted MRI scan. A learning curve was generated to determine the number of patients required for a stable machine-learning model. Patients were randomly stratified into 2 training sets and 1 test set. Two partial least-squares regression models were trained, each capable of predicting lumen and epithelium density. Predicted density values were calculated for each patient in the test dataset, mapped into the MRI space, and compared between regions confirmed as high-grade prostate cancer. RESULTS: The learning-curve analysis showed that a stable fit was achieved with data from 10 patients. Maps indicated that regions of increased epithelium and decreased lumen density, generated from each independent model, corresponded with pathologist-annotated regions of high-grade cancer. CONCLUSIONS: We present a radio-pathomic approach to mapping prostate cancer. We find that the maps are useful for highlighting high-grade tumors. This technique may be relevant for dose-painting strategies in prostate radiation therapy. © 2018 The Author(s). Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). 2018-04-24 2018-08-01 /pmc/articles/PMC6190585/ /pubmed/29908785 http://dx.doi.org/10.1016/j.ijrobp.2018.04.044 Text en This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). https://doi.org/10.1016/j.ijrobp.2018.04.044 |
spellingShingle | Article McGarry, Sean D. Hurrell, Sarah L. Iczkowski, Kenneth A. Hall, William Kaczmarowski, Amy L. Banerjee, Anjishnu Keuter, Tucker Jacobsohn, Kenneth Bukowy, John D. Nevalainen, Marja T. Hohenwalter, Mark D. See, William A. LaViolette, Peter S. Radio-pathomic Maps of Epithelium and Lumen Density Predict the Location of High-Grade Prostate Cancer |
title | Radio-pathomic Maps of Epithelium and Lumen Density Predict the Location of High-Grade Prostate Cancer |
title_full | Radio-pathomic Maps of Epithelium and Lumen Density Predict the Location of High-Grade Prostate Cancer |
title_fullStr | Radio-pathomic Maps of Epithelium and Lumen Density Predict the Location of High-Grade Prostate Cancer |
title_full_unstemmed | Radio-pathomic Maps of Epithelium and Lumen Density Predict the Location of High-Grade Prostate Cancer |
title_short | Radio-pathomic Maps of Epithelium and Lumen Density Predict the Location of High-Grade Prostate Cancer |
title_sort | radio-pathomic maps of epithelium and lumen density predict the location of high-grade prostate cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6190585/ https://www.ncbi.nlm.nih.gov/pubmed/29908785 http://dx.doi.org/10.1016/j.ijrobp.2018.04.044 |
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