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A radiogenomic dataset of non-small cell lung cancer

Medical image biomarkers of cancer promise improvements in patient care through advances in precision medicine. Compared to genomic biomarkers, image biomarkers provide the advantages of being non-invasive, and characterizing a heterogeneous tumor in its entirety, as opposed to limited tissue availa...

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Autores principales: Bakr, Shaimaa, Gevaert, Olivier, Echegaray, Sebastian, Ayers, Kelsey, Zhou, Mu, Shafiq, Majid, Zheng, Hong, Benson, Jalen Anthony, Zhang, Weiruo, Leung, Ann N. C., Kadoch, Michael, D. Hoang, Chuong, Shrager, Joseph, Quon, Andrew, Rubin, Daniel L., Plevritis, Sylvia K., Napel, Sandy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6190740/
https://www.ncbi.nlm.nih.gov/pubmed/30325352
http://dx.doi.org/10.1038/sdata.2018.202
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author Bakr, Shaimaa
Gevaert, Olivier
Echegaray, Sebastian
Ayers, Kelsey
Zhou, Mu
Shafiq, Majid
Zheng, Hong
Benson, Jalen Anthony
Zhang, Weiruo
Leung, Ann N. C.
Kadoch, Michael
D. Hoang, Chuong
Shrager, Joseph
Quon, Andrew
Rubin, Daniel L.
Plevritis, Sylvia K.
Napel, Sandy
author_facet Bakr, Shaimaa
Gevaert, Olivier
Echegaray, Sebastian
Ayers, Kelsey
Zhou, Mu
Shafiq, Majid
Zheng, Hong
Benson, Jalen Anthony
Zhang, Weiruo
Leung, Ann N. C.
Kadoch, Michael
D. Hoang, Chuong
Shrager, Joseph
Quon, Andrew
Rubin, Daniel L.
Plevritis, Sylvia K.
Napel, Sandy
author_sort Bakr, Shaimaa
collection PubMed
description Medical image biomarkers of cancer promise improvements in patient care through advances in precision medicine. Compared to genomic biomarkers, image biomarkers provide the advantages of being non-invasive, and characterizing a heterogeneous tumor in its entirety, as opposed to limited tissue available via biopsy. We developed a unique radiogenomic dataset from a Non-Small Cell Lung Cancer (NSCLC) cohort of 211 subjects. The dataset comprises Computed Tomography (CT), Positron Emission Tomography (PET)/CT images, semantic annotations of the tumors as observed on the medical images using a controlled vocabulary, and segmentation maps of tumors in the CT scans. Imaging data are also paired with results of gene mutation analyses, gene expression microarrays and RNA sequencing data from samples of surgically excised tumor tissue, and clinical data, including survival outcomes. This dataset was created to facilitate the discovery of the underlying relationship between tumor molecular and medical image features, as well as the development and evaluation of prognostic medical image biomarkers.
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spelling pubmed-61907402018-10-29 A radiogenomic dataset of non-small cell lung cancer Bakr, Shaimaa Gevaert, Olivier Echegaray, Sebastian Ayers, Kelsey Zhou, Mu Shafiq, Majid Zheng, Hong Benson, Jalen Anthony Zhang, Weiruo Leung, Ann N. C. Kadoch, Michael D. Hoang, Chuong Shrager, Joseph Quon, Andrew Rubin, Daniel L. Plevritis, Sylvia K. Napel, Sandy Sci Data Data Descriptor Medical image biomarkers of cancer promise improvements in patient care through advances in precision medicine. Compared to genomic biomarkers, image biomarkers provide the advantages of being non-invasive, and characterizing a heterogeneous tumor in its entirety, as opposed to limited tissue available via biopsy. We developed a unique radiogenomic dataset from a Non-Small Cell Lung Cancer (NSCLC) cohort of 211 subjects. The dataset comprises Computed Tomography (CT), Positron Emission Tomography (PET)/CT images, semantic annotations of the tumors as observed on the medical images using a controlled vocabulary, and segmentation maps of tumors in the CT scans. Imaging data are also paired with results of gene mutation analyses, gene expression microarrays and RNA sequencing data from samples of surgically excised tumor tissue, and clinical data, including survival outcomes. This dataset was created to facilitate the discovery of the underlying relationship between tumor molecular and medical image features, as well as the development and evaluation of prognostic medical image biomarkers. Nature Publishing Group 2018-10-16 /pmc/articles/PMC6190740/ /pubmed/30325352 http://dx.doi.org/10.1038/sdata.2018.202 Text en Copyright © 2018, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article.
spellingShingle Data Descriptor
Bakr, Shaimaa
Gevaert, Olivier
Echegaray, Sebastian
Ayers, Kelsey
Zhou, Mu
Shafiq, Majid
Zheng, Hong
Benson, Jalen Anthony
Zhang, Weiruo
Leung, Ann N. C.
Kadoch, Michael
D. Hoang, Chuong
Shrager, Joseph
Quon, Andrew
Rubin, Daniel L.
Plevritis, Sylvia K.
Napel, Sandy
A radiogenomic dataset of non-small cell lung cancer
title A radiogenomic dataset of non-small cell lung cancer
title_full A radiogenomic dataset of non-small cell lung cancer
title_fullStr A radiogenomic dataset of non-small cell lung cancer
title_full_unstemmed A radiogenomic dataset of non-small cell lung cancer
title_short A radiogenomic dataset of non-small cell lung cancer
title_sort radiogenomic dataset of non-small cell lung cancer
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6190740/
https://www.ncbi.nlm.nih.gov/pubmed/30325352
http://dx.doi.org/10.1038/sdata.2018.202
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