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Oxygenation in cell culture: Critical parameters for reproducibility are routinely not reported

Mammalian cell culture is foundational to biomedical research, and the reproducibility of research findings across the sciences is drawing increasing attention. While many components contribute to reproducibility, the reporting of factors that impact oxygen delivery in the general biomedical literat...

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Autores principales: Al-Ani, Abdullah, Toms, Derek, Kondro, Douglas, Thundathil, Jarin, Yu, Yang, Ungrin, Mark
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191109/
https://www.ncbi.nlm.nih.gov/pubmed/30325922
http://dx.doi.org/10.1371/journal.pone.0204269
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author Al-Ani, Abdullah
Toms, Derek
Kondro, Douglas
Thundathil, Jarin
Yu, Yang
Ungrin, Mark
author_facet Al-Ani, Abdullah
Toms, Derek
Kondro, Douglas
Thundathil, Jarin
Yu, Yang
Ungrin, Mark
author_sort Al-Ani, Abdullah
collection PubMed
description Mammalian cell culture is foundational to biomedical research, and the reproducibility of research findings across the sciences is drawing increasing attention. While many components contribute to reproducibility, the reporting of factors that impact oxygen delivery in the general biomedical literature has the potential for both significant impact, and immediate improvement. The relationship between the oxygen consumption rate of cells and the diffusive delivery of oxygen through the overlying medium layer means parameters such as medium depth and cell type can cause significant differences in oxygenation for cultures nominally maintained under the same conditions. While oxygenation levels are widely understood to significantly impact the phenotype of cultured cells in the abstract, in practise the importance of the above parameters does not appear to be well recognized in the non-specialist research community. On analyzing two hundred articles from high-impact journals we find a large majority missing at least one key piece of information necessary to ensure consistency in replication. We propose that explicitly reporting these values should be a requirement for publication.
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spelling pubmed-61911092018-10-25 Oxygenation in cell culture: Critical parameters for reproducibility are routinely not reported Al-Ani, Abdullah Toms, Derek Kondro, Douglas Thundathil, Jarin Yu, Yang Ungrin, Mark PLoS One Research Article Mammalian cell culture is foundational to biomedical research, and the reproducibility of research findings across the sciences is drawing increasing attention. While many components contribute to reproducibility, the reporting of factors that impact oxygen delivery in the general biomedical literature has the potential for both significant impact, and immediate improvement. The relationship between the oxygen consumption rate of cells and the diffusive delivery of oxygen through the overlying medium layer means parameters such as medium depth and cell type can cause significant differences in oxygenation for cultures nominally maintained under the same conditions. While oxygenation levels are widely understood to significantly impact the phenotype of cultured cells in the abstract, in practise the importance of the above parameters does not appear to be well recognized in the non-specialist research community. On analyzing two hundred articles from high-impact journals we find a large majority missing at least one key piece of information necessary to ensure consistency in replication. We propose that explicitly reporting these values should be a requirement for publication. Public Library of Science 2018-10-16 /pmc/articles/PMC6191109/ /pubmed/30325922 http://dx.doi.org/10.1371/journal.pone.0204269 Text en © 2018 Al-Ani et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Al-Ani, Abdullah
Toms, Derek
Kondro, Douglas
Thundathil, Jarin
Yu, Yang
Ungrin, Mark
Oxygenation in cell culture: Critical parameters for reproducibility are routinely not reported
title Oxygenation in cell culture: Critical parameters for reproducibility are routinely not reported
title_full Oxygenation in cell culture: Critical parameters for reproducibility are routinely not reported
title_fullStr Oxygenation in cell culture: Critical parameters for reproducibility are routinely not reported
title_full_unstemmed Oxygenation in cell culture: Critical parameters for reproducibility are routinely not reported
title_short Oxygenation in cell culture: Critical parameters for reproducibility are routinely not reported
title_sort oxygenation in cell culture: critical parameters for reproducibility are routinely not reported
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191109/
https://www.ncbi.nlm.nih.gov/pubmed/30325922
http://dx.doi.org/10.1371/journal.pone.0204269
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