Cargando…

miRWalk: An online resource for prediction of microRNA binding sites

miRWalk is an open-source platform providing an intuitive interface that generates predicted and validated miRNA-binding sites of known genes of human, mouse, rat, dog and cow. The core of miRWalk is the miRNA target site prediction with the random-forest-based approach software TarPmiR searching th...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sticht, Carsten, De La Torre, Carolina, Parveen, Alisha, Gretz, Norbert
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6193719/ https://www.ncbi.nlm.nih.gov/pubmed/30335862 http://dx.doi.org/10.1371/journal.pone.0206239

Ejemplares similares

In-Silico Algorithms for the Screening of Possible microRNA Binding Sites and Their Interactions
por: Dweep, Harsh, et al.
Publicado: (2013)

Parallel Analysis of mRNA and microRNA Microarray Profiles to Explore Functional Regulatory Patterns in Polycystic Kidney Disease: Using PKD/Mhm Rat Model
por: Dweep, Harsh, et al.
Publicado: (2013)

Alteration of mRNA and microRNA expression profiles in rat muscular type vasculature in early postnatal development
por: Gaynullina, Dina, et al.
Publicado: (2015)

Sulforaphane Promotes Dendritic Cell Stimulatory Capacity Through Modulation of Regulatory Molecules, JAK/STAT3- and MicroRNA-Signaling
por: Wang, Yangyi, et al.
Publicado: (2020)

Corrigendum: Sulforaphane promotes dendritic cell stimulatory capacity through modulation of regulatory molecules, JAK/STAT3- and microRNA-signaling
por: Wang, Yangyi, et al.
Publicado: (2022)

Novel plant microRNAs from broccoletti sprouts do not show cross-kingdom regulation of pancreatic cancer
por: Xiao, Xi, et al.
Publicado: (2020)

miRDB: an online resource for microRNA target prediction and functional annotations
por: Wong, Nathan, et al.
Publicado: (2014)

The Pattern of microRNA Binding Site Distribution
por: Zhang, Fangyuan, et al.
Publicado: (2017)

Functional microRNA binding site variants
por: Yuan, Ye, et al.
Publicado: (2018)

MicroRNA-binding site polymorphisms in hematological malignancies
por: Dzikiewicz-Krawczyk, Agnieszka
Publicado: (2014)

Cyst formation in the PKD2 (1-703) transgenic rat precedes deregulation of proliferation-related pathways
por: Koupepidou, Panayiota, et al.
Publicado: (2010)

Correction: cyst formation in the PKD2 (1-703) transgenic rat precedes deregulation of proliferation-related pathways
por: Koupepidou, Panayiota, et al.
Publicado: (2011)

On the availability of microRNA-induced silencing complexes, saturation of microRNA-binding sites and stoichiometry
por: Mayya, Vinay K., et al.
Publicado: (2015)

Gene expression profiling reveals aryl hydrocarbon receptor as a possible target for photobiomodulation when using blue light
por: Becker, Anja, et al.
Publicado: (2016)

Circular RNAs are depleted of polymorphisms at microRNA binding sites
por: Thomas, Laurent F., et al.
Publicado: (2014)

CLIP-based prediction of mammalian microRNA binding sites
por: Liu, Chaochun, et al.
Publicado: (2013)

Genome-wide identification of clusters of predicted microRNA binding sites as microRNA sponge candidates
por: Pan, Xiaoyong, et al.
Publicado: (2018)

CNVs-microRNAs Interactions Demonstrate Unique Characteristics in the Human Genome. An Interspecies in silico Analysis
por: Dweep, Harsh, et al.
Publicado: (2013)

Polymorphisms in microRNA target sites modulate risk of lymphoblastic and myeloid leukemias and affect microRNA binding
por: Dzikiewicz-Krawczyk, Agnieszka, et al.
Publicado: (2014)

miRepress: modelling gene expression regulation by microRNA with non-conventional binding sites
por: Ghosal, Suman, et al.
Publicado: (2016)

The crosstalk between glomerular endothelial cells and podocytes controls their responses to metabolic stimuli in diabetic nephropathy
por: Albrecht, Michael, et al.
Publicado: (2023)

MicroRNA Target Site Identification by Integrating Sequence and Binding Information
por: Majoros, William H., et al.
Publicado: (2013)

MicroRNA binding site polymorphisms as biomarkers in cancer management and research
por: Cipollini, Monica, et al.
Publicado: (2014)

MicroRNA modules prefer to bind weak and unconventional target sites
por: Ding, Jun, et al.
Publicado: (2015)

Altered Gene Expression Associated with microRNA Binding Site Polymorphisms
por: Võsa, Urmo, et al.
Publicado: (2015)

Polymorphisms in MicroRNA Binding Sites Predict Colorectal Cancer Survival
por: Yang, Ying-Pi, et al.
Publicado: (2017)

STarMirDB: A database of microRNA binding sites
por: Rennie, William, et al.
Publicado: (2016)

SNPs within microRNA binding sites and the prognosis of breast cancer
por: Zhang, Liwen, et al.
Publicado: (2021)

Argonaute—a database for gene regulation by mammalian microRNAs
por: Shahi, Priyanka, et al.
Publicado: (2006)

Haploinsufficiency of Tumor Suppressor Genes is Driven by the Cumulative Effect of microRNAs, microRNA Binding Site Polymorphisms and microRNA Polymorphisms: An In silico Approach
por: Manikandan, Mayakannan, et al.
Publicado: (2012)

MicroRNA profiling of rats with ochratoxin A nephrotoxicity
por: Dai, Qiu, et al.
Publicado: (2014)

miRecords: an integrated resource for microRNA–target interactions
por: Xiao, Feifei, et al.
Publicado: (2009)

Microarray-based approach identifies microRNAs and their target functional patterns in polycystic kidney disease
por: Pandey, Priyanka, et al.
Publicado: (2008)

Adenosine deamination in human transcripts generates novel microRNA binding sites
por: Borchert, Glen M., et al.
Publicado: (2009)

STarMir: a web server for prediction of microRNA binding sites
por: Rennie, William, et al.
Publicado: (2014)

Single Nucleotide Polymorphisms in MicroRNA Binding Sites: Implications in Colorectal Cancer
por: Bhaumik, Panchalee, et al.
Publicado: (2014)

Duplicate Gene Divergence by Changes in MicroRNA Binding Sites in Arabidopsis and Brassica
por: Wang, Sishuo, et al.
Publicado: (2015)

TTCA: an R package for the identification of differentially expressed genes in time course microarray data
por: Albrecht, Marco, et al.
Publicado: (2017)

Bioinformatics Resources for MicroRNA Discovery
por: Moore, Alyssa C., et al.
Publicado: (2016)

miRmap web: comprehensive microRNA target prediction online
por: Vejnar, Charles E., et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_7oeqp305f4v7cvpokp373psrhu