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Variants in the 14q32 miRNA cluster are associated with osteosarcoma risk in the Spanish population

Association studies in osteosarcoma risk found significant results in intergenic regions, suggesting that regions which do not codify for proteins could play an important role. The deregulation of microRNAs (miRNAs) has been already associated with osteosarcoma. Consequently, genetic variants affect...

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Autores principales: Martin-Guerrero, Idoia, Bilbao-Aldaiturriaga, Nerea, Gutierrez-Camino, Angela, Santos-Zorrozua, Borja, Dolžan, Vita, Patiño-Garcia, Ana, Garcia-Orad, Africa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6194014/
https://www.ncbi.nlm.nih.gov/pubmed/30337581
http://dx.doi.org/10.1038/s41598-018-33712-4
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author Martin-Guerrero, Idoia
Bilbao-Aldaiturriaga, Nerea
Gutierrez-Camino, Angela
Santos-Zorrozua, Borja
Dolžan, Vita
Patiño-Garcia, Ana
Garcia-Orad, Africa
author_facet Martin-Guerrero, Idoia
Bilbao-Aldaiturriaga, Nerea
Gutierrez-Camino, Angela
Santos-Zorrozua, Borja
Dolžan, Vita
Patiño-Garcia, Ana
Garcia-Orad, Africa
author_sort Martin-Guerrero, Idoia
collection PubMed
description Association studies in osteosarcoma risk found significant results in intergenic regions, suggesting that regions which do not codify for proteins could play an important role. The deregulation of microRNAs (miRNAs) has been already associated with osteosarcoma. Consequently, genetic variants affecting miRNA function could be associated with risk. This study aimed to evaluate the involvement of all genetic variants in pre-miRNAs described so far in relationship to the risk of osteosarcoma. We analyzed a total of 213 genetic variants in 206 pre-miRNAs in two cohorts of osteosarcoma patients (n = 100) and their corresponding controls (n = 256) from Spanish and Slovenian populations, using Goldengate Veracode technology (Illumina). Four polymorphisms in pre-miRNAs at 14q32 miRNA cluster were associated with osteosarcoma risk in the Spanish population (rs12894467, rs61992671, rs58834075 and rs12879262). Pathway enrichment analysis including target genes of these miRNAs pointed out the WNT signaling pathways overrepresented. Moreover, different single nucleotide polymorphism (SNP) effects between the two populations included were observed, suggesting the existence of population differences. In conclusion, 14q32 miRNA cluster seems to be a hotspot for osteosarcoma susceptibility in the Spanish population, but not in the Slovenian, which supports the idea of the existence of population differences in developing this disease.
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spelling pubmed-61940142018-10-24 Variants in the 14q32 miRNA cluster are associated with osteosarcoma risk in the Spanish population Martin-Guerrero, Idoia Bilbao-Aldaiturriaga, Nerea Gutierrez-Camino, Angela Santos-Zorrozua, Borja Dolžan, Vita Patiño-Garcia, Ana Garcia-Orad, Africa Sci Rep Article Association studies in osteosarcoma risk found significant results in intergenic regions, suggesting that regions which do not codify for proteins could play an important role. The deregulation of microRNAs (miRNAs) has been already associated with osteosarcoma. Consequently, genetic variants affecting miRNA function could be associated with risk. This study aimed to evaluate the involvement of all genetic variants in pre-miRNAs described so far in relationship to the risk of osteosarcoma. We analyzed a total of 213 genetic variants in 206 pre-miRNAs in two cohorts of osteosarcoma patients (n = 100) and their corresponding controls (n = 256) from Spanish and Slovenian populations, using Goldengate Veracode technology (Illumina). Four polymorphisms in pre-miRNAs at 14q32 miRNA cluster were associated with osteosarcoma risk in the Spanish population (rs12894467, rs61992671, rs58834075 and rs12879262). Pathway enrichment analysis including target genes of these miRNAs pointed out the WNT signaling pathways overrepresented. Moreover, different single nucleotide polymorphism (SNP) effects between the two populations included were observed, suggesting the existence of population differences. In conclusion, 14q32 miRNA cluster seems to be a hotspot for osteosarcoma susceptibility in the Spanish population, but not in the Slovenian, which supports the idea of the existence of population differences in developing this disease. Nature Publishing Group UK 2018-10-18 /pmc/articles/PMC6194014/ /pubmed/30337581 http://dx.doi.org/10.1038/s41598-018-33712-4 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Martin-Guerrero, Idoia
Bilbao-Aldaiturriaga, Nerea
Gutierrez-Camino, Angela
Santos-Zorrozua, Borja
Dolžan, Vita
Patiño-Garcia, Ana
Garcia-Orad, Africa
Variants in the 14q32 miRNA cluster are associated with osteosarcoma risk in the Spanish population
title Variants in the 14q32 miRNA cluster are associated with osteosarcoma risk in the Spanish population
title_full Variants in the 14q32 miRNA cluster are associated with osteosarcoma risk in the Spanish population
title_fullStr Variants in the 14q32 miRNA cluster are associated with osteosarcoma risk in the Spanish population
title_full_unstemmed Variants in the 14q32 miRNA cluster are associated with osteosarcoma risk in the Spanish population
title_short Variants in the 14q32 miRNA cluster are associated with osteosarcoma risk in the Spanish population
title_sort variants in the 14q32 mirna cluster are associated with osteosarcoma risk in the spanish population
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6194014/
https://www.ncbi.nlm.nih.gov/pubmed/30337581
http://dx.doi.org/10.1038/s41598-018-33712-4
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