Cargando…
A comparison of metrics and performance characteristics of different search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases
BACKGROUND: Conducting a systematic review requires a comprehensive bibliographic search. Comparing different search strategies is essential for choosing those that cover all useful data sources. Our aim was to develop search strategies for article retrieval for a systematic review of the global epi...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6194627/ https://www.ncbi.nlm.nih.gov/pubmed/30340535 http://dx.doi.org/10.1186/s12874-018-0569-8 |
_version_ | 1783364263547502592 |
---|---|
author | Bikbov, Boris Perico, Norberto Remuzzi, Giuseppe |
author_facet | Bikbov, Boris Perico, Norberto Remuzzi, Giuseppe |
author_sort | Bikbov, Boris |
collection | PubMed |
description | BACKGROUND: Conducting a systematic review requires a comprehensive bibliographic search. Comparing different search strategies is essential for choosing those that cover all useful data sources. Our aim was to develop search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases, and evaluate their metrics and performance characteristics that could be useful for other systematic epidemiologic reviews. METHODS: We described the methodological framework and analysed approaches applied in the previously conducted systematic review intended to obtain published data for global estimates of the kidney and urinary disease burden. We used several search strategies in PubMed and EMBASE, and compared several metrics: number needed to retrieve (NNR), number of extracted data rows, number of covered countries, and when appropriate, sensitivity, specificity, precision, and accuracy. RESULTS: The initial search obtained 29,460 records from PubMed, and 4247 from EMBASE. After the revision, the full text of 381 and 14 articles respectively was obtained for data extraction (the percentage of useful records is 1.3% for PubMed, 0.3% for EMBASE). For PubMed we developed two search strategies and compared them with a ‘gold standard’ formed by merging their results: free word search strategy (FreeWoSS) was based on the search for keywords in all fields, and subject headings based search strategy (SuHeSS) used only MeSH-mapped conditions and countries names. SuHeSS excluded almost 15% of useful articles and data rows extracted from them, but had a lower NNR of 40 and higher specificity. FreeWoSS had better sensitivity and was able to cover the vast majority of articles and extracted data rows, but had a higher NNR of 65. CONCLUSIONS: The sensitive FreeWoSS strategy provides more data for modelling, while the more specific SuHeSS strategy could be used when resources are limited. EMBASE has limited value for our systematic review. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12874-018-0569-8) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6194627 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-61946272018-10-25 A comparison of metrics and performance characteristics of different search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases Bikbov, Boris Perico, Norberto Remuzzi, Giuseppe BMC Med Res Methodol Research Article BACKGROUND: Conducting a systematic review requires a comprehensive bibliographic search. Comparing different search strategies is essential for choosing those that cover all useful data sources. Our aim was to develop search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases, and evaluate their metrics and performance characteristics that could be useful for other systematic epidemiologic reviews. METHODS: We described the methodological framework and analysed approaches applied in the previously conducted systematic review intended to obtain published data for global estimates of the kidney and urinary disease burden. We used several search strategies in PubMed and EMBASE, and compared several metrics: number needed to retrieve (NNR), number of extracted data rows, number of covered countries, and when appropriate, sensitivity, specificity, precision, and accuracy. RESULTS: The initial search obtained 29,460 records from PubMed, and 4247 from EMBASE. After the revision, the full text of 381 and 14 articles respectively was obtained for data extraction (the percentage of useful records is 1.3% for PubMed, 0.3% for EMBASE). For PubMed we developed two search strategies and compared them with a ‘gold standard’ formed by merging their results: free word search strategy (FreeWoSS) was based on the search for keywords in all fields, and subject headings based search strategy (SuHeSS) used only MeSH-mapped conditions and countries names. SuHeSS excluded almost 15% of useful articles and data rows extracted from them, but had a lower NNR of 40 and higher specificity. FreeWoSS had better sensitivity and was able to cover the vast majority of articles and extracted data rows, but had a higher NNR of 65. CONCLUSIONS: The sensitive FreeWoSS strategy provides more data for modelling, while the more specific SuHeSS strategy could be used when resources are limited. EMBASE has limited value for our systematic review. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12874-018-0569-8) contains supplementary material, which is available to authorized users. BioMed Central 2018-10-19 /pmc/articles/PMC6194627/ /pubmed/30340535 http://dx.doi.org/10.1186/s12874-018-0569-8 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Bikbov, Boris Perico, Norberto Remuzzi, Giuseppe A comparison of metrics and performance characteristics of different search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases |
title | A comparison of metrics and performance characteristics of different search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases |
title_full | A comparison of metrics and performance characteristics of different search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases |
title_fullStr | A comparison of metrics and performance characteristics of different search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases |
title_full_unstemmed | A comparison of metrics and performance characteristics of different search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases |
title_short | A comparison of metrics and performance characteristics of different search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases |
title_sort | comparison of metrics and performance characteristics of different search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6194627/ https://www.ncbi.nlm.nih.gov/pubmed/30340535 http://dx.doi.org/10.1186/s12874-018-0569-8 |
work_keys_str_mv | AT bikbovboris acomparisonofmetricsandperformancecharacteristicsofdifferentsearchstrategiesforarticleretrievalforasystematicreviewoftheglobalepidemiologyofkidneyandurinarydiseases AT periconorberto acomparisonofmetricsandperformancecharacteristicsofdifferentsearchstrategiesforarticleretrievalforasystematicreviewoftheglobalepidemiologyofkidneyandurinarydiseases AT remuzzigiuseppe acomparisonofmetricsandperformancecharacteristicsofdifferentsearchstrategiesforarticleretrievalforasystematicreviewoftheglobalepidemiologyofkidneyandurinarydiseases AT acomparisonofmetricsandperformancecharacteristicsofdifferentsearchstrategiesforarticleretrievalforasystematicreviewoftheglobalepidemiologyofkidneyandurinarydiseases AT bikbovboris comparisonofmetricsandperformancecharacteristicsofdifferentsearchstrategiesforarticleretrievalforasystematicreviewoftheglobalepidemiologyofkidneyandurinarydiseases AT periconorberto comparisonofmetricsandperformancecharacteristicsofdifferentsearchstrategiesforarticleretrievalforasystematicreviewoftheglobalepidemiologyofkidneyandurinarydiseases AT remuzzigiuseppe comparisonofmetricsandperformancecharacteristicsofdifferentsearchstrategiesforarticleretrievalforasystematicreviewoftheglobalepidemiologyofkidneyandurinarydiseases AT comparisonofmetricsandperformancecharacteristicsofdifferentsearchstrategiesforarticleretrievalforasystematicreviewoftheglobalepidemiologyofkidneyandurinarydiseases |