Data on whole genome shotgun sequencing report of clinical S. maltophilia strains from India

Stenotrophomonas maltophilia is an important emerging nosocomial pathogen with broad level multi-drug resistance. There is a lack of genomic information on S. maltophilia to understand the antimicrobial resistance (AMR) mechanism behind. The data article reports on whole genome sequence information...

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Detalles Bibliográficos
Autores principales: Devanga Ragupathi, Naveen Kumar, Veeraraghavan, Balaji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Genetics, Genomics and Molecular Biology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6197317/
https://www.ncbi.nlm.nih.gov/pubmed/30364539
http://dx.doi.org/10.1016/j.dib.2018.10.005
Descripción
Sumario:Stenotrophomonas maltophilia is an important emerging nosocomial pathogen with broad level multi-drug resistance. There is a lack of genomic information on S. maltophilia to understand the antimicrobial resistance (AMR) mechanism behind. The data article reports on whole genome sequence information of 9 clinical S. maltophilia strains isolated from a tertiary care hospital in India. Isolates were sequenced using Ion Torrent PGM platform. Raw reads were assembled and annotated, where the genome size ranged from ~ 3.2 to ~ 4.5 Mb with average 57.6× coverage. AMR genes blaL1, blaL2, Smqnr, aac(6׳)-lz and aph(3׳)-llc were observed among the isolates in addition to multiple virulence factors. Five isolates were identified to be ST15, ST283, ST284, ST285 and ST286.

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