Data on whole genome shotgun sequencing report of clinical S. maltophilia strains from India

Stenotrophomonas maltophilia is an important emerging nosocomial pathogen with broad level multi-drug resistance. There is a lack of genomic information on S. maltophilia to understand the antimicrobial resistance (AMR) mechanism behind. The data article reports on whole genome sequence information...

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Autores principales: Devanga Ragupathi, Naveen Kumar, Veeraraghavan, Balaji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Genetics, Genomics and Molecular Biology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6197317/
https://www.ncbi.nlm.nih.gov/pubmed/30364539
http://dx.doi.org/10.1016/j.dib.2018.10.005
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author Devanga Ragupathi, Naveen Kumar
Veeraraghavan, Balaji
author_facet Devanga Ragupathi, Naveen Kumar
Veeraraghavan, Balaji
author_sort Devanga Ragupathi, Naveen Kumar
collection PubMed
description Stenotrophomonas maltophilia is an important emerging nosocomial pathogen with broad level multi-drug resistance. There is a lack of genomic information on S. maltophilia to understand the antimicrobial resistance (AMR) mechanism behind. The data article reports on whole genome sequence information of 9 clinical S. maltophilia strains isolated from a tertiary care hospital in India. Isolates were sequenced using Ion Torrent PGM platform. Raw reads were assembled and annotated, where the genome size ranged from ~ 3.2 to ~ 4.5 Mb with average 57.6× coverage. AMR genes blaL1, blaL2, Smqnr, aac(6׳)-lz and aph(3׳)-llc were observed among the isolates in addition to multiple virulence factors. Five isolates were identified to be ST15, ST283, ST284, ST285 and ST286.
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spelling pubmed-61973172018-10-24 Data on whole genome shotgun sequencing report of clinical S. maltophilia strains from India Devanga Ragupathi, Naveen Kumar Veeraraghavan, Balaji Data Brief Genetics, Genomics and Molecular Biology Stenotrophomonas maltophilia is an important emerging nosocomial pathogen with broad level multi-drug resistance. There is a lack of genomic information on S. maltophilia to understand the antimicrobial resistance (AMR) mechanism behind. The data article reports on whole genome sequence information of 9 clinical S. maltophilia strains isolated from a tertiary care hospital in India. Isolates were sequenced using Ion Torrent PGM platform. Raw reads were assembled and annotated, where the genome size ranged from ~ 3.2 to ~ 4.5 Mb with average 57.6× coverage. AMR genes blaL1, blaL2, Smqnr, aac(6׳)-lz and aph(3׳)-llc were observed among the isolates in addition to multiple virulence factors. Five isolates were identified to be ST15, ST283, ST284, ST285 and ST286. Elsevier 2018-10-04 /pmc/articles/PMC6197317/ /pubmed/30364539 http://dx.doi.org/10.1016/j.dib.2018.10.005 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Genetics, Genomics and Molecular Biology
Devanga Ragupathi, Naveen Kumar
Veeraraghavan, Balaji
Data on whole genome shotgun sequencing report of clinical S. maltophilia strains from India
title Data on whole genome shotgun sequencing report of clinical S. maltophilia strains from India
title_full Data on whole genome shotgun sequencing report of clinical S. maltophilia strains from India
title_fullStr Data on whole genome shotgun sequencing report of clinical S. maltophilia strains from India
title_full_unstemmed Data on whole genome shotgun sequencing report of clinical S. maltophilia strains from India
title_short Data on whole genome shotgun sequencing report of clinical S. maltophilia strains from India
title_sort data on whole genome shotgun sequencing report of clinical s. maltophilia strains from india
topic Genetics, Genomics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6197317/
https://www.ncbi.nlm.nih.gov/pubmed/30364539
http://dx.doi.org/10.1016/j.dib.2018.10.005
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