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Simulation of kinematic Kikuchi diffraction patterns from atomistic structures
One of the limitations of atomistic simulations is that many of the computational tools used to extract structural information from atomic trajectories provide metrics that are not directly compatible with experiments for validation. In this work, to bridge between simulation and experiment, a metho...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6197776/ https://www.ncbi.nlm.nih.gov/pubmed/30364675 http://dx.doi.org/10.1016/j.mex.2018.09.001 |
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author | Herron, Adam D. Coleman, Shawn P. Dang, Khanh Q. Spearot, Douglas E. Homer, Eric R. |
author_facet | Herron, Adam D. Coleman, Shawn P. Dang, Khanh Q. Spearot, Douglas E. Homer, Eric R. |
author_sort | Herron, Adam D. |
collection | PubMed |
description | One of the limitations of atomistic simulations is that many of the computational tools used to extract structural information from atomic trajectories provide metrics that are not directly compatible with experiments for validation. In this work, to bridge between simulation and experiment, a method is presented to produce simulated Kikuchi diffraction patterns using data from atomistic simulations, without requiring a priori specification of the crystal structure or defect periodicity. The Kikuchi pattern simulation is based on the kinematic theory of diffraction, with Kikuchi line intensities computed via a discrete structure factor calculation. Reciprocal lattice points are mapped to Kikuchi lines using a geometric projection of the reciprocal space data. This method is validated using single crystal atomistic models, and the novelty of this approach is emphasized by simulating kinematic Kikuchi diffraction patterns from an atomistic model containing a nanoscale dislocation loop. Deviations in kinematic Kikuchi line intensities are explained considering the displacement field of the dislocation loop, as is done in diffraction contrast theory. |
format | Online Article Text |
id | pubmed-6197776 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-61977762018-10-25 Simulation of kinematic Kikuchi diffraction patterns from atomistic structures Herron, Adam D. Coleman, Shawn P. Dang, Khanh Q. Spearot, Douglas E. Homer, Eric R. MethodsX Materials Science One of the limitations of atomistic simulations is that many of the computational tools used to extract structural information from atomic trajectories provide metrics that are not directly compatible with experiments for validation. In this work, to bridge between simulation and experiment, a method is presented to produce simulated Kikuchi diffraction patterns using data from atomistic simulations, without requiring a priori specification of the crystal structure or defect periodicity. The Kikuchi pattern simulation is based on the kinematic theory of diffraction, with Kikuchi line intensities computed via a discrete structure factor calculation. Reciprocal lattice points are mapped to Kikuchi lines using a geometric projection of the reciprocal space data. This method is validated using single crystal atomistic models, and the novelty of this approach is emphasized by simulating kinematic Kikuchi diffraction patterns from an atomistic model containing a nanoscale dislocation loop. Deviations in kinematic Kikuchi line intensities are explained considering the displacement field of the dislocation loop, as is done in diffraction contrast theory. Elsevier 2018-09-06 /pmc/articles/PMC6197776/ /pubmed/30364675 http://dx.doi.org/10.1016/j.mex.2018.09.001 Text en © 2018 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Materials Science Herron, Adam D. Coleman, Shawn P. Dang, Khanh Q. Spearot, Douglas E. Homer, Eric R. Simulation of kinematic Kikuchi diffraction patterns from atomistic structures |
title | Simulation of kinematic Kikuchi diffraction patterns from atomistic structures |
title_full | Simulation of kinematic Kikuchi diffraction patterns from atomistic structures |
title_fullStr | Simulation of kinematic Kikuchi diffraction patterns from atomistic structures |
title_full_unstemmed | Simulation of kinematic Kikuchi diffraction patterns from atomistic structures |
title_short | Simulation of kinematic Kikuchi diffraction patterns from atomistic structures |
title_sort | simulation of kinematic kikuchi diffraction patterns from atomistic structures |
topic | Materials Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6197776/ https://www.ncbi.nlm.nih.gov/pubmed/30364675 http://dx.doi.org/10.1016/j.mex.2018.09.001 |
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