MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database

SUMMARY: We present MIDORI server, a user-friendly web platform that uses a curated reference dataset, MIDORI, for high throughput taxonomic classification of unknown metazoan mitochondrial-encoded gene sequences. Currently three methods of taxonomic assignments: RDP Classifier, SPINGO and SINTAX, a...

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Detalles Bibliográficos
Autores principales: Leray, Matthieu, Ho, Shian-Lei, Lin, I-Jeng, Machida, Ryuji J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6198853/
https://www.ncbi.nlm.nih.gov/pubmed/29878054
http://dx.doi.org/10.1093/bioinformatics/bty454
Descripción
Sumario:SUMMARY: We present MIDORI server, a user-friendly web platform that uses a curated reference dataset, MIDORI, for high throughput taxonomic classification of unknown metazoan mitochondrial-encoded gene sequences. Currently three methods of taxonomic assignments: RDP Classifier, SPINGO and SINTAX, are implemented. AVAILABILITY AND IMPLEMENTATION: The web server is freely available at {http://reference-midori.info/server.php}.

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