MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database

SUMMARY: We present MIDORI server, a user-friendly web platform that uses a curated reference dataset, MIDORI, for high throughput taxonomic classification of unknown metazoan mitochondrial-encoded gene sequences. Currently three methods of taxonomic assignments: RDP Classifier, SPINGO and SINTAX, a...

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Autores principales: Leray, Matthieu, Ho, Shian-Lei, Lin, I-Jeng, Machida, Ryuji J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6198853/
https://www.ncbi.nlm.nih.gov/pubmed/29878054
http://dx.doi.org/10.1093/bioinformatics/bty454
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author Leray, Matthieu
Ho, Shian-Lei
Lin, I-Jeng
Machida, Ryuji J
author_facet Leray, Matthieu
Ho, Shian-Lei
Lin, I-Jeng
Machida, Ryuji J
author_sort Leray, Matthieu
collection PubMed
description SUMMARY: We present MIDORI server, a user-friendly web platform that uses a curated reference dataset, MIDORI, for high throughput taxonomic classification of unknown metazoan mitochondrial-encoded gene sequences. Currently three methods of taxonomic assignments: RDP Classifier, SPINGO and SINTAX, are implemented. AVAILABILITY AND IMPLEMENTATION: The web server is freely available at {http://reference-midori.info/server.php}.
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spelling pubmed-61988532018-10-26 MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database Leray, Matthieu Ho, Shian-Lei Lin, I-Jeng Machida, Ryuji J Bioinformatics Applications Notes SUMMARY: We present MIDORI server, a user-friendly web platform that uses a curated reference dataset, MIDORI, for high throughput taxonomic classification of unknown metazoan mitochondrial-encoded gene sequences. Currently three methods of taxonomic assignments: RDP Classifier, SPINGO and SINTAX, are implemented. AVAILABILITY AND IMPLEMENTATION: The web server is freely available at {http://reference-midori.info/server.php}. Oxford University Press 2018-11-01 2018-06-05 /pmc/articles/PMC6198853/ /pubmed/29878054 http://dx.doi.org/10.1093/bioinformatics/bty454 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Leray, Matthieu
Ho, Shian-Lei
Lin, I-Jeng
Machida, Ryuji J
MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database
title MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database
title_full MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database
title_fullStr MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database
title_full_unstemmed MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database
title_short MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database
title_sort midori server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6198853/
https://www.ncbi.nlm.nih.gov/pubmed/29878054
http://dx.doi.org/10.1093/bioinformatics/bty454
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