Cargando…

The Grayling Genome Reveals Selection on Gene Expression Regulation after Whole-Genome Duplication

Whole-genome duplication (WGD) has been a major evolutionary driver of increased genomic complexity in vertebrates. One such event occurred in the salmonid family ∼80 Ma (Ss4R) giving rise to a plethora of structural and regulatory duplicate-driven divergence, making salmonids an exemplary system to...

Descripción completa

Detalles Bibliográficos
Autores principales:	Varadharajan, Srinidhi, Sandve, Simen R, Gillard, Gareth B, Tørresen, Ole K, Mulugeta, Teshome D, Hvidsten, Torgeir R, Lien, Sigbjørn, Asbjørn Vøllestad, Leif, Jentoft, Sissel, Nederbragt, Alexander J, Jakobsen, Kjetill S
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6200313/ https://www.ncbi.nlm.nih.gov/pubmed/30239729 http://dx.doi.org/10.1093/gbe/evy201

Ejemplares similares

The Chromosome-Level Genome Assembly of European Grayling Reveals Aspects of a Unique Genome Evolution Process Within Salmonids
por: Sävilammi, Tiina, et al.
Publicado: (2019)

Genomic characterization of the Atlantic cod sex-locus
por: Star, Bastiaan, et al.
Publicado: (2016)

Teleost genomic repeat landscapes in light of diversification rates and ecology
por: Reinar, William B., et al.
Publicado: (2023)

Extracting functional trends from whole genome duplication events using comparative genomics
por: Hermansen, Russell A., et al.
Publicado: (2016)

Whole genome sequencing data and de novo draft assemblies for 66 teleost species
por: Malmstrøm, Martin, et al.
Publicado: (2017)

Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats
por: Tørresen, Ole K., et al.
Publicado: (2018)

Genetic Parentage Analysis Confirms a Polygynandrous Breeding System in the European Grayling (Thymallus thymallus)
por: Haddeland, Peter Jørgen, et al.
Publicado: (2015)

Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions
por: Solbakken, Monica H., et al.
Publicado: (2016)

Contemporary divergence in early life history in grayling (Thymallus thymallus)
por: Thomassen, Gaute, et al.
Publicado: (2011)

Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification
por: Robertson, Fiona M., et al.
Publicado: (2017)

De Novo Gene Evolution of Antifreeze Glycoproteins in Codfishes Revealed by Whole Genome Sequence Data
por: Baalsrud, Helle Tessand, et al.
Publicado: (2018)

The Genome of the Great Gerbil Reveals Species-Specific Duplication of an MHCII Gene
por: Nilsson, Pernille, et al.
Publicado: (2020)

SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes
por: Mulugeta, Teshome Dagne, et al.
Publicado: (2019)

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod
por: Tørresen, Ole K., et al.
Publicado: (2017)

Metagenomic Shotgun Analyses Reveal Complex Patterns of Intra- and Interspecific Variation in the Intestinal Microbiomes of Codfishes
por: Riiser, Even Sannes, et al.
Publicado: (2020)

Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication
por: Gillard, Gareth B., et al.
Publicado: (2021)

Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod (Gadus morhua L.)
por: Berg, Paul R., et al.
Publicado: (2015)

A High-Quality Assembly of the Nine-Spined Stickleback (Pungitius pungitius) Genome
por: Varadharajan, Srinidhi, et al.
Publicado: (2019)

Salinity‐induced transcriptome profiles in marine and freshwater threespine stickleback after an abrupt 6‐hour exposure
por: Taugbøl, Annette, et al.
Publicado: (2022)

Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish
por: Lie, Kai K., et al.
Publicado: (2018)

Innovation in Nucleotide-Binding Oligomerization-Like Receptor and Toll-Like Receptor Sensing Drives the Major Histocompatibility Complex-II Free Atlantic Cod Immune System
por: Jin, Xingkun, et al.
Publicado: (2020)

Unraveling the Evolution of the Atlantic Cod’s (Gadus morhua L.) Alternative Immune Strategy
por: Malmstrøm, Martin, et al.
Publicado: (2013)

Correction: Unraveling the Evolution of the Atlantic Cod’s (Gadus morhua L.) Alternative Immune Strategy
por: Malmstrøm, Martin, et al.
Publicado: (2013)

Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location
por: Star, Bastiaan, et al.
Publicado: (2013)

The Wholly Grayling on science
Publicado: (2009)

Successive Losses of Central Immune Genes Characterize the Gadiformes’ Alternate Immunity
por: Solbakken, Monica H., et al.
Publicado: (2016)

Transkingdom network analysis provides insight into host-microbiome interactions in Atlantic salmon
por: Strand, Marius A., et al.
Publicado: (2021)

Functional validation of transposable element–derived cis-regulatory elements in Atlantic salmon
por: Sahlström, Hanna M, et al.
Publicado: (2023)

Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod
por: Berg, Paul R., et al.
Publicado: (2016)

Adaptive protein evolution through length variation of short tandem repeats in Arabidopsis
por: Reinar, William B., et al.
Publicado: (2023)

Linking species habitat and past palaeoclimatic events to evolution of the teleost innate immune system
por: Solbakken, Monica Hongrø, et al.
Publicado: (2017)

The genomic mosaicism of hybrid speciation
por: Elgvin, Tore O., et al.
Publicado: (2017)

Evolution of Hemoglobin Genes in Codfishes Influenced by Ocean Depth
por: Baalsrud, Helle Tessand, et al.
Publicado: (2017)

Long‐read sequence capture of the haemoglobin gene clusters across codfish species
por: Hoff, Siv Nam Khang, et al.
Publicado: (2018)

A genome-wide analysis of nonribosomal peptide synthetase gene clusters and their peptides in a Planktothrix rubescens strain
por: Rounge, Trine B, et al.
Publicado: (2009)

Cross-species amplification of 36 cyprinid microsatellite loci in Phoxinus phoxinus (L.) and Scardinius erythrophthalmus (L.)
por: Holmen, Johannes, et al.
Publicado: (2009)

Complete mitochondrial genome of the yellow-spotted grayling Thymallus flavomaculatus (Salmoniformes, Salmonidae)*
por: Balakirev, Evgeniy S., et al.
Publicado: (2016)

Palindromic Sequence Artifacts Generated during Next Generation Sequencing Library Preparation from Historic and Ancient DNA
por: Star, Bastiaan, et al.
Publicado: (2014)

The Atlantic salmon genome provides insights into rediploidization
por: Lien, Sigbjørn, et al.
Publicado: (2016)

Diversified regulation of circadian clock gene expression following whole genome duplication
por: West, Alexander C., et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_9t3sulfeup3k7s5mn6jvsiak5e