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The common origin of symmetry and structure in genetic sequences

Biologists have long sought a way to explain how statistical properties of genetic sequences emerged and are maintained through evolution. On the one hand, non-random structures at different scales indicate a complex genome organisation. On the other hand, single-strand symmetry has been scrutinised...

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Autores principales: Cristadoro, Giampaolo, Degli Esposti, Mirko, Altmann, Eduardo G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6202410/
https://www.ncbi.nlm.nih.gov/pubmed/30361485
http://dx.doi.org/10.1038/s41598-018-34136-w
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author Cristadoro, Giampaolo
Degli Esposti, Mirko
Altmann, Eduardo G.
author_facet Cristadoro, Giampaolo
Degli Esposti, Mirko
Altmann, Eduardo G.
author_sort Cristadoro, Giampaolo
collection PubMed
description Biologists have long sought a way to explain how statistical properties of genetic sequences emerged and are maintained through evolution. On the one hand, non-random structures at different scales indicate a complex genome organisation. On the other hand, single-strand symmetry has been scrutinised using neutral models in which correlations are not considered or irrelevant, contrary to empirical evidence. Different studies investigated these two statistical features separately, reaching minimal consensus despite sustained efforts. Here we unravel previously unknown symmetries in genetic sequences, which are organized hierarchically through scales in which non-random structures are known to be present. These observations are confirmed through the statistical analysis of the human genome and explained through a simple domain model. These results suggest that domain models which account for the cumulative action of mobile elements can explain simultaneously non-random structures and symmetries in genetic sequences.
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spelling pubmed-62024102018-10-29 The common origin of symmetry and structure in genetic sequences Cristadoro, Giampaolo Degli Esposti, Mirko Altmann, Eduardo G. Sci Rep Article Biologists have long sought a way to explain how statistical properties of genetic sequences emerged and are maintained through evolution. On the one hand, non-random structures at different scales indicate a complex genome organisation. On the other hand, single-strand symmetry has been scrutinised using neutral models in which correlations are not considered or irrelevant, contrary to empirical evidence. Different studies investigated these two statistical features separately, reaching minimal consensus despite sustained efforts. Here we unravel previously unknown symmetries in genetic sequences, which are organized hierarchically through scales in which non-random structures are known to be present. These observations are confirmed through the statistical analysis of the human genome and explained through a simple domain model. These results suggest that domain models which account for the cumulative action of mobile elements can explain simultaneously non-random structures and symmetries in genetic sequences. Nature Publishing Group UK 2018-10-25 /pmc/articles/PMC6202410/ /pubmed/30361485 http://dx.doi.org/10.1038/s41598-018-34136-w Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Cristadoro, Giampaolo
Degli Esposti, Mirko
Altmann, Eduardo G.
The common origin of symmetry and structure in genetic sequences
title The common origin of symmetry and structure in genetic sequences
title_full The common origin of symmetry and structure in genetic sequences
title_fullStr The common origin of symmetry and structure in genetic sequences
title_full_unstemmed The common origin of symmetry and structure in genetic sequences
title_short The common origin of symmetry and structure in genetic sequences
title_sort common origin of symmetry and structure in genetic sequences
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6202410/
https://www.ncbi.nlm.nih.gov/pubmed/30361485
http://dx.doi.org/10.1038/s41598-018-34136-w
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